View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_high_55 (Length: 294)

Name: NF19773_high_55
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_high_55
NF19773_high_55
[»] chr4 (10 HSPs)
chr4 (18-277)||(25817684-25817946)
chr4 (10-90)||(5288533-5288613)
chr4 (10-90)||(24060587-24060667)
chr4 (25-91)||(19482544-19482610)
chr4 (25-91)||(42504210-42504276)
chr4 (18-92)||(2765383-2765457)
chr4 (18-91)||(16528582-16528658)
chr4 (26-91)||(29065294-29065359)
chr4 (25-91)||(37762833-37762899)
chr4 (20-90)||(41545436-41545506)
[»] chr5 (6 HSPs)
chr5 (10-91)||(25493830-25493911)
chr5 (10-90)||(3040277-3040357)
chr5 (10-90)||(30700887-30700967)
chr5 (10-90)||(30735338-30735418)
chr5 (10-79)||(40519190-40519258)
chr5 (26-90)||(7547293-7547356)
[»] chr7 (9 HSPs)
chr7 (10-90)||(46297624-46297704)
chr7 (15-90)||(1985022-1985097)
chr7 (19-90)||(21882786-21882857)
chr7 (19-90)||(22631500-22631571)
chr7 (10-91)||(46413759-46413843)
chr7 (21-91)||(23730521-23730589)
chr7 (25-79)||(24250482-24250536)
chr7 (10-83)||(20125601-20125674)
chr7 (10-91)||(23611766-23611846)
[»] chr8 (6 HSPs)
chr8 (10-91)||(29414393-29414474)
chr8 (26-90)||(5718464-5718528)
chr8 (18-83)||(24068141-24068205)
chr8 (26-91)||(36947241-36947306)
chr8 (26-90)||(5686307-5686371)
chr8 (18-78)||(43063881-43063941)
[»] chr1 (10 HSPs)
chr1 (18-91)||(43537161-43537234)
chr1 (18-90)||(10061611-10061683)
chr1 (21-90)||(23906623-23906692)
chr1 (18-91)||(35413045-35413118)
chr1 (18-90)||(29657383-29657455)
chr1 (25-91)||(11470050-11470116)
chr1 (10-91)||(21540085-21540166)
chr1 (25-90)||(35149681-35149746)
chr1 (31-90)||(33077719-33077778)
chr1 (10-90)||(26469955-26470035)
[»] chr3 (6 HSPs)
chr3 (10-90)||(34905857-34905937)
chr3 (10-90)||(18271980-18272060)
chr3 (18-78)||(26442968-26443028)
chr3 (10-91)||(1632819-1632900)
chr3 (16-79)||(48897708-48897771)
chr3 (26-83)||(31192086-31192143)
[»] chr6 (7 HSPs)
chr6 (19-90)||(6784719-6784790)
chr6 (10-90)||(6519251-6519331)
chr6 (25-83)||(32871777-32871835)
chr6 (17-91)||(34713519-34713593)
chr6 (19-90)||(2130509-2130580)
chr6 (26-86)||(28867212-28867272)
chr6 (18-83)||(11301855-11301920)
[»] scaffold0122 (1 HSPs)
scaffold0122 (26-90)||(18661-18725)
[»] chr2 (13 HSPs)
chr2 (25-90)||(14131182-14131247)
chr2 (16-83)||(19945748-19945815)
chr2 (17-91)||(27007187-27007261)
chr2 (26-91)||(35457427-35457492)
chr2 (26-89)||(4434324-4434390)
chr2 (18-90)||(13716727-13716799)
chr2 (18-90)||(20142987-20143059)
chr2 (21-86)||(27407444-27407509)
chr2 (25-90)||(37714449-37714514)
chr2 (25-90)||(38320217-38320282)
chr2 (18-90)||(3167915-3167987)
chr2 (10-90)||(32976037-32976119)
chr2 (38-80)||(31845453-31845495)
[»] scaffold0018 (1 HSPs)
scaffold0018 (21-83)||(69949-70011)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 25817684 - 25817946
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaaattttttctt--cttgctaggacttg 115  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||| ||||||||||  |||||| ||  ||||||||||||||    
T  25817684 gtctcagccaattaaatttgttatttgacggaaatcaagtgaggtaatggtgtgtaattaagaaaatgtgttaggtttttttttttcttgctaggacttg 25817783  T
Q  116 atcttgaacctccaacttcttaactcttataagttcaaaccaattgatctacccaacctctt-nnnnnnnnccttttaagatgacttttaaccaacttaa 214  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  25817784 atcttgaacctccaactttttaactcttataagttcaaaccaattgatctacccaacctcttaaaaaaaaaccttttaagatgacttttaaccaacttaa 25817883  T
Q  215 agggtacttgtatattaagtcttcctcatgccaagtttcgaaccgaagacaactagatcaaag 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25817884 agggtacttgtatattaagtcttcctcatgccaagtttcgaaccgaagacaactagatcaaag 25817946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 5288533 - 5288613
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||| ||||||||||||||||||||||||||||| |  |||||||| ||| |||||||||||||||||  ||||||||||    
T  5288533 aagaaaatgtctcagccaattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaattaaaaaaatgtgtta 5288613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 24060587 - 24060667
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||| |||||| ||| |||||||||||||||| || | |||||||| ||| |||||||||||||||||||||||||||||    
T  24060587 aagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataatggtgtgtaattaaggaaatgtgtta 24060667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 19482544 - 19482610
Alignment:
Q  25 ccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    |||||||||||||||||||| |  |||||||| || ||||||||||||||||||||||| |||||||    
T  19482544 ccaattaaatttgttatttggcggaaatcaagggaagtaatggtgtgtaattaaggaaaggtgttaa 19482610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 42504276 - 42504210
Alignment:
Q  25 ccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    |||||||||||||||||||| |  |||||||| ||||||||| |||||||||||||||| |||||||    
T  42504276 ccaattaaatttgttatttgccggaaatcaagggaggtaatgatgtgtaattaaggaaaggtgttaa 42504210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 2765457 - 2765383
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaaa 92  Q
    |||| |||||||||||||||||||| | ||||||||| | ||| ||||| ||||||||||| |||| ||||||||    
T  2765457 gtctaagccaattaaatttgttattggccaaaaatcatgggagataatgatgtgtaattaatgaaaggtgttaaa 2765383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 16528582 - 16528658
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtga---ggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    |||||||||||||||||||||||||||||  ||||||| |||     ||||||||||||||||| ||||||||||||    
T  16528582 gtctcagccaattaaatttgttatttgtcggaaatcaaatgatatattaatggtgtgtaattaaagaaatgtgttaa 16528658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 29065359 - 29065294
Alignment:
Q  26 caattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    ||||||||||||||||||| |  |||||||  ||||||||||||||||||||| |||| |||||||    
T  29065359 caattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgttaa 29065294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 37762833 - 37762899
Alignment:
Q  25 ccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    |||||||||||||||||||| | ||| ||||  ||  ||||| |||||||||||||||| |||||||    
T  37762833 ccaattaaatttgttatttgacgaaagtcaaaggaaataatgatgtgtaattaaggaaaagtgttaa 37762899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 41545436 - 41545506
Alignment:
Q  20 ctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    |||| |||||||||||||||||||| || ||||| |   ||||||| |||||||||||| |||| ||||||    
T  41545436 ctcaaccaattaaatttgttatttggcagaaatcgaagaaggtaattgtgtgtaattaatgaaaggtgtta 41545506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 25493830 - 25493911
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    ||||| |||||||||||||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||||| ||||    
T  25493830 aagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggtaatggtgtgtaattaaggaaatgtattaa 25493911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 3040357 - 3040277
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||| ||||||||  |||||||||||||||| ||   ||||||||| |||||||||||||||||||||||||| ||||||    
T  3040357 aagaaaatgtctcaatcaattaaatttgttatctggtgaaaatcaagggaggtaatggtgtgtaattaaggaaaggtgtta 3040277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 30700967 - 30700887
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||| ||||||||  ||||||||||||||||||| | ||||| ||| ||||||||| |||||||||||| ||| ||||||    
T  30700967 aagaaaatgtctcaatcaattaaatttgttatttgacgaaaattaagggaggtaatgttgtgtaattaagaaaaggtgtta 30700887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 30735418 - 30735338
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||| ||||||||  ||||||||||||||||||| |  |||||||| ||||||||| || ||||||||| ||| ||||||    
T  30735418 aagaaaatgtctcaatcaattaaatttgttatttggcggaaatcaagggaggtaatgctgggtaattaagaaaaagtgtta 30735338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 40519190 - 40519258
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaag 79  Q
    ||||||| |||||| ||||||||||||||||||||    ||||| || ||||||||| ||||||||||||    
T  40519190 aagaataagtctcaaccaattaaatttgttatttgatggaaatc-agggaggtaatgatgtgtaattaag 40519258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 7547293 - 7547356
Alignment:
Q  26 caattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    |||| |||||||||||||| |  |||||||| ||| ||||| | |||||||||||||||||||||    
T  7547293 caatcaaatttgttatttgacggaaatcaag-gagataatgatttgtaattaaggaaatgtgtta 7547356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 46297624 - 46297704
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||| |||||||||||| || ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  46297624 aagaaaatgtctcagccattttaatttgttatttgtcgaaaatcaagggagttaatggtgtgtaattaaggaaatgtgtta 46297704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 1985022 - 1985097
Alignment:
Q  15 tatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    |||||||||||||||||||||||||||||| |  ||||||||  |||||||||| |||||||||||||||||||||    
T  1985022 tatgtctcagccaattaaatttgttatttgccggaaatcaaggaaggtaatggtatgtaattaaggaaatgtgtta 1985097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 21882857 - 21882786
Alignment:
Q  19 tctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    |||||||||||||||||||||||||| |  |||||||| |||||||||||||||||||||||||| ||||||    
T  21882857 tctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgtta 21882786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 22631500 - 22631571
Alignment:
Q  19 tctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||||||||||||||||||||||||||  |||||||  ||| |||| ||||||||||||||||| ||||||    
T  22631500 tctcagccaattaaatttgttatttgtcggaaatcaaaggagataatagtgtgtaattaaggaaaggtgtta 22631571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 46413843 - 46413759
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgt---caaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    ||||| |||||||| ||||||||||||||||||||    |  |||||||| ||||||||| |||||||||||||||| |||||||    
T  46413843 aagaaaatgtctcaaccaattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaattaaggaaaggtgttaa 46413759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 23730589 - 23730521
Alignment:
Q  21 tcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    ||||| ||||||||| ||||||||||  |||||||| |||||||||  ||||||||||||||| |||||||    
T  23730589 tcagcaaattaaattcgttatttgtcggaaatcaagagaggtaatg--gtgtaattaaggaaaggtgttaa 23730521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 24250536 - 24250482
Alignment:
Q  25 ccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaag 79  Q
    |||||| |||||||||||||||  |||||||| ||||||||||| ||||||||||    
T  24250536 ccaatttaatttgttatttgtcggaaatcaagggaggtaatggtttgtaattaag 24250482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 20125601 - 20125674
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaa 83  Q
    ||||| |||| |||||||||||||||||||| |||||| |||| ||   || ||||||||||||||||| ||||    
T  20125601 aagaaaatgtgtcagccaattaaatttgttacttgtcagaaattaaagaagataatggtgtgtaattaaagaaa 20125674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 23611846 - 23611766
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    ||||| |||||||| | |||||||||||||||||| |  |||||||| ||||||||||  |||||||||| ||| |||||||    
T  23611846 aagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaagagaggtaatgg-atgtaattaagtaaaggtgttaa 23611766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 29414393 - 29414474
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||||  |||||||||||| |||||||||||| |||||||    
T  29414393 aagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaatggtgtttaattaaggaaaggtgttaa 29414474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 5718528 - 5718464
Alignment:
Q  26 caattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||||||||| |||||||||  ||||||||  ||||||||||||||||||||||||||||||||    
T  5718528 caattaaatttattatttgtcggaaatcaaggaaggtaatggtgtgtaattaaggaaatgtgtta 5718464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 24068205 - 24068141
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaa 83  Q
    ||||||||||||||||||||||||||| | ||||||||  ||||| ||||||||||||||||||||    
T  24068205 gtctcagccaattaaatttgttatttg-ccaaaatcaaaggaggtgatggtgtgtaattaaggaaa 24068141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 36947306 - 36947241
Alignment:
Q  26 caattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    ||||||||||||||||| | ||||||| ||| ||||||||| ||| ||||||| ||||||||||||    
T  36947306 caattaaatttgttattggccaaaaatgaagggaggtaatgatgtataattaaagaaatgtgttaa 36947241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 5686371 - 5686307
Alignment:
Q  26 caattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||||||||||||||||| |  |||||||| ||||||||  | ||||||||| |||||||||||    
T  5686371 caattaaatttgttatttgccggaaatcaagggaggtaataatatgtaattaatgaaatgtgtta 5686307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 43063941 - 43063881
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaa 78  Q
    ||||||| ||||||||||| ||||||||  |||||||| | |||||||| ||| |||||||    
T  43063941 gtctcagtcaattaaatttattatttgttgaaaatcaaataaggtaatgatgtataattaa 43063881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 43537234 - 43537161
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    ||||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||| ||||||||||||    
T  43537234 gtctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaagaaatgtgttaa 43537161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 10061611 - 10061683
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    |||||| |||||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||||||||    
T  10061611 gtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtgtaattaaggaaatgtgtta 10061683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 23906692 - 23906623
Alignment:
Q  21 tcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |||| ||||||    
T  23906692 tcagccaattaaatttgttatttgccacaaatcaagagaggtaatggtgtgtaattaaagaaaggtgtta 23906623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 35413045 - 35413118
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    |||||| |||||||||||||||||||| |  |||||||| |||||||| ||||||||||||||||| |||||||    
T  35413045 gtctcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgtaattaaggaaaggtgttaa 35413118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 29657383 - 29657455
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    |||||| |||||||||||||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||    
T  29657383 gtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaatgatatgtaattaaggaaaggtgtta 29657455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 11470050 - 11470116
Alignment:
Q  25 ccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    |||||||||||||||||||| |  |||||||| ||||||||| |||||||||||| |||| ||||||    
T  11470050 ccaattaaatttgttatttggcggaaatcaagggaggtaatgatgtgtaattaagaaaatatgttaa 11470116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 21540085 - 21540166
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    ||||| ||||||||||||||||||||||||||||| |  |||| ||| ||| |||||  |||||||||| |||| |||||||    
T  21540085 aagaaaatgtctcagccaattaaatttgttatttggcggaaattaagggagataatgaagtgtaattaaagaaaggtgttaa 21540166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 35149746 - 35149681
Alignment:
Q  25 ccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    |||||||||||||||||||| || |||||||| ||| ||||| ||| |||||||||||| ||||||    
T  35149746 ccaattaaatttgttatttgacataaatcaagggagataatgatgtataattaaggaaaggtgtta 35149681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 33077719 - 33077778
Alignment:
Q  31 aaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||||| |||||| | ||||||||| ||||||||| |||||||||||  ||||||||||    
T  33077719 aaatttgatatttgccgaaaatcaagagaggtaatgatgtgtaattaaataaatgtgtta 33077778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 26469955 - 26470035
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||| |||||||| | |||||||||| ||||||    ||||||||   || |||||||||||||||||||||| ||||||    
T  26469955 aagaaaatgtctcaacaaattaaatttattatttaatgaaaatcaaagaagataatggtgtgtaattaaggaaaggtgtta 26470035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 34905857 - 34905937
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||  ||||||||| ||| |||||||||||| ||||||    
T  34905857 aagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaatgatgtataattaaggaaaggtgtta 34905937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 18272060 - 18271980
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||| || ||||| |||||||||||||||||||| |  |||||||  ||||||||||||||||||||| |||| ||||||    
T  18272060 aagaaaatatctcaaccaattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgtta 18271980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 26442968 - 26443028
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaa 78  Q
    |||||| |||||||||||||||||||| |  |||||||| |||||||||||||||||||||    
T  26442968 gtctcaaccaattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaattaa 26443028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 1632819 - 1632900
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    ||||| |||||||| | |||||||||||||||||  |  |||||||  ||||||||||||||||||||| |||| |||||||    
T  1632819 aagaaaatgtctcaactaattaaatttgttattttgcggaaatcaaaggaggtaatggtgtgtaattaaagaaacgtgttaa 1632900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 48897771 - 48897708
Alignment:
Q  16 atgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaag 79  Q
    |||| ||||| | |||||||||||||||||| ||||||||  ||  ||||||||||||||||||    
T  48897771 atgtttcagcaagttaaatttgttatttgtcgaaaatcaatggaaataatggtgtgtaattaag 48897708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 31192086 - 31192143
Alignment:
Q  26 caattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaa 83  Q
    |||||||||||||||||| |  ||||| ||| ||| |||| |||||||||||||||||    
T  31192086 caattaaatttgttatttattgaaaattaagagagataatagtgtgtaattaaggaaa 31192143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 6784790 - 6784719
Alignment:
Q  19 tctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||||||||||||||||||||||||||  |||||||| ||| |||||||||||||||||| ||| ||||||    
T  6784790 tctcagccaattaaatttgttatttgtcggaaatcaagggagataatggtgtgtaattaagaaaaggtgtta 6784719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 6519251 - 6519331
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||| ||||||||| ||||||||||||||||||| | ||||||||  || |||||| |||||||||||| ||||| ||||    
T  6519251 aagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaaggatgtaatgatgtgtaattaagaaaatgagtta 6519331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 32871835 - 32871777
Alignment:
Q  25 ccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaa 83  Q
    |||||||||||||||||||| |  |||||||| |||||||| |||||||||||||||||    
T  32871835 ccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgtaattaaggaaa 32871777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 34713519 - 34713593
Alignment:
Q  17 tgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    ||||||| | |||||||||||||||||| | ||||||||| || ||||||||||||| ||||| ||| |||||||    
T  34713519 tgtctcaactaattaaatttgttatttggcgaaaatcaagggatgtaatggtgtgtatttaagaaaaggtgttaa 34713593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 2130580 - 2130509
Alignment:
Q  19 tctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||| |||||||||||||||||||| |  |||||||  ||||| || ||||||||||||||||| ||||||    
T  2130580 tctcaaccaattaaatttgttatttggcggaaatcaaaggaggtgattgtgtgtaattaaggaaaggtgtta 2130509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 28867212 - 28867272
Alignment:
Q  26 caattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgt 86  Q
    ||||||||||||||||||||   |||||||  |||||||| || |||||||||||||||||    
T  28867212 caattaaatttgttatttgttggaaatcaaaggaggtaatagtatgtaattaaggaaatgt 28867272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 11301855 - 11301920
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaa 83  Q
    ||||||| ||||| |||||||||||| || |||||||||  ||||||| || | ||||||||||||    
T  11301855 gtctcagtcaattgaatttgttatttctcgaaaatcaagcaaggtaatagtatataattaaggaaa 11301920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 18661 - 18725
Alignment:
Q  26 caattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||||||||||||||||||| ||||| ||| ||| |||||||| ||||||||||||||||||||    
T  18661 caattaaatttgttatttgtcgaaaattaagggagataatggtgagtaattaaggaaatgtgtta 18725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 14131182 - 14131247
Alignment:
Q  25 ccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    |||||||||| ||||||||| |  |||||||| ||| |||||||||||||||||||||||||||||    
T  14131182 ccaattaaatctgttatttggcggaaatcaagcgagataatggtgtgtaattaaggaaatgtgtta 14131247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 19945815 - 19945748
Alignment:
Q  16 atgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaa 83  Q
    ||||||| | ||||||||||||||||||| |  |||| ||| ||||||||||||||||||||||||||    
T  19945815 atgtctcggtcaattaaatttgttatttgacggaaattaagggaggtaatggtgtgtaattaaggaaa 19945748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 27007187 - 27007261
Alignment:
Q  17 tgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    ||||||| |||| ||||||||||||||| |  |||||||| |||||||| ||||||| ||||||||| |||||||    
T  27007187 tgtctcaaccaaataaatttgttatttggcggaaatcaagggaggtaatagtgtgtatttaaggaaaagtgttaa 27007261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 35457427 - 35457492
Alignment:
Q  26 caattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgttaa 91  Q
    ||||||||||| ||||||  |  |||||||  ||||||||||||||||||||||||||||||||||    
T  35457427 caattaaatttattatttagcggaaatcaaaggaggtaatggtgtgtaattaaggaaatgtgttaa 35457492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 4434324 - 4434390
Alignment:
Q  26 caattaaatttgttatttgtcaaaaatcaagtgagg---taatggtgtgtaattaaggaaatgtgtt 89  Q
    ||||||||||||||||||| | ||||||||| ||||   |||||||||||||||||| |||||||||    
T  4434324 caattaaatttgttatttgccgaaaatcaagggaggaggtaatggtgtgtaattaagtaaatgtgtt 4434390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 13716799 - 13716727
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    |||||| |||||||||||||| ||||| | ||||||||  |||||||| ||||||||||||| ||| ||||||    
T  13716799 gtctcaaccaattaaatttgtgatttggcgaaaatcaaaggaggtaatagtgtgtaattaagaaaaggtgtta 13716727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 20142987 - 20143059
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    |||||| |||||||||||| ||||||| |  ||||||||  |||||||| |||||||||||||||| ||||||    
T  20142987 gtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatgatgtgtaattaaggaaaggtgtta 20143059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 27407444 - 27407509
Alignment:
Q  21 tcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgt 86  Q
    |||||||||||||||||||||||  |  ||||||||  || ||||| |||||||||||||||||||    
T  27407444 tcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaaggaaatgt 27407509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 37714449 - 37714514
Alignment:
Q  25 ccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||||||||||||||||||    |||||||  ||| |||||||||||||||||||||| ||||||    
T  37714449 ccaattaaatttgttatttgatggaaatcaaaggagataatggtgtgtaattaaggaaaggtgtta 37714514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 38320282 - 38320217
Alignment:
Q  25 ccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||||||||||||||||||    |||||||  ||||||||| ||||||| |||||||||||||||    
T  38320282 ccaattaaatttgttatttggtggaaatcaaaggaggtaatgatgtgtaaataaggaaatgtgtta 38320217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 3167915 - 3167987
Alignment:
Q  18 gtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaatgtgtta 90  Q
    |||||| |||||||||||| |||||||||  |||||||   |||||||| ||||||||||| |||| ||||||    
T  3167915 gtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgatgtgtaattaaagaaaggtgtta 3167987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 32976119 - 32976037
Alignment:
Q  10 aagaatatgtctcagccaattaaatttgttatttgtcaaaaatcaagtgaggt--aatggtgtgtaattaaggaaatgtgtta 90  Q
    ||||| |||||||| ||||||||||||||||||||||  |||||||   ||||  |||||| |||||||||| ||| ||||||    
T  32976119 aagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaaagaaggtaaaatggtatgtaattaagaaaaggtgtta 32976037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 31845453 - 31845495
Alignment:
Q  38 ttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaagg 80  Q
    |||||||||  |||||||| |||||||||||||||||||||||    
T  31845453 ttatttgtcggaaatcaagagaggtaatggtgtgtaattaagg 31845495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 70011 - 69949
Alignment:
Q  21 tcagccaattaaatttgttatttgtcaaaaatcaagtgaggtaatggtgtgtaattaaggaaa 83  Q
    |||||||||||||||||||||| | |  |||||||| ||| |||||| |||||||||||||||    
T  70011 tcagccaattaaatttgttattggccggaaatcaagggagataatggggtgtaattaaggaaa 69949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University