View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_high_6 (Length: 586)
Name: NF19773_high_6
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 271 - 537
Target Start/End: Complemental strand, 38050740 - 38050474
Alignment:
| Q |
271 |
actaagttttaagattagagtttcgaacatgtatgtatgtatgttgttcattattcttgacacaaaaattggtctgtttctttatactattgtttaatgg |
370 |
Q |
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| T |
38050740 |
actaagttttatgattagagtttggaacatgtatgtatgtatgttgttcattattcttgacacaaaaattggtctgtttctttatactattgtttaatgg |
38050641 |
T |
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| Q |
371 |
ttttgctggtaggtttatgtgtcatatctttaactgctccttccttcttgtcttttctaatggcgttagcatactatagaagaattgattcagaaattga |
470 |
Q |
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| T |
38050640 |
ttttgctggtaggtttatgtgtcatatctttaactgctccttccttcttgtcttttctaatggcgttagcatactatagaagaattgattcagaaattga |
38050541 |
T |
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| Q |
471 |
tcttagtggttacgtgcagctctaaggttttaaatatattaatcattattaggtttttatattgcca |
537 |
Q |
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| T |
38050540 |
tcttagtggttgcgtgcagctctaaggttttaaatatattaatcattattaggtttttatattgcca |
38050474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 38051015 - 38050772
Alignment:
| Q |
5 |
gagaagcaaaggatctttagttcgtgctaagaaagttgtatggttaaagttaaggtatgctcgtggactaagaagaaagttggtgttttttccaaggttt |
104 |
Q |
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| T |
38051015 |
gagaatcaaaggatctttagttcgtgctaagaaagttgtatggttaaagttaaggtatgctcgtggactaagaagaaagttggtgttttttccaaggttt |
38050916 |
T |
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| Q |
105 |
aaatgcgggttttattaccgtagaagaaggttttcacagcttttaaacaatagtggcagcagccaccaccgtaaagttgattcttcctcgtgtttatggt |
204 |
Q |
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| T |
38050915 |
aaatgcgggttttattaccgtagaagaaggttttcacagcttttaaacaatagtggcagcagccaccaccgtaaagttgattcttcctcgtgtttatggt |
38050816 |
T |
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| Q |
205 |
ag----tggtaaatacaaagacaaaccaaactagtctgtaattc |
244 |
Q |
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| T |
38050815 |
agtgcatggtaaatacaaagacaaaccaaaccagtctgtaattc |
38050772 |
T |
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