View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_high_60 (Length: 272)
Name: NF19773_high_60
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_60 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 11034202 - 11034460
Alignment:
| Q |
1 |
tcttatgtcttgcttacctatgcgactcgataaacgtgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatagtaacaga |
100 |
Q |
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| T |
11034202 |
tcttatgtcttgcttacctgtgcgactcgataaacatgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatagtaacaga |
11034301 |
T |
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| Q |
101 |
ttaagtgttaattagtagcactcactctaacaaatgggtgtggaagatcgatgtaattgtaaataaaagaaaattaagcaaccaacttgaaaaaatagag |
200 |
Q |
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| T |
11034302 |
ttgagtgttaattagtagcactcactctaacaaatgggtgtggaagatcgatgtaattgtaaataaaagaaaattaagcaaccaacttgaaaaaatagag |
11034401 |
T |
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| Q |
201 |
tatctaaagcgcagaattgcatatataccaaccataattacagtgagcctggttatttt |
259 |
Q |
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| T |
11034402 |
tatctaaagagcagaattgcatatataccaaccataattacagtgagcctggttatttt |
11034460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 29 - 256
Target Start/End: Original strand, 11008834 - 11009065
Alignment:
| Q |
29 |
gataaacgtgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatagtaacagattaagtgttaattagtagcactcactct |
128 |
Q |
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| T |
11008834 |
gataaacgtgcaactatccaagccgcgttattccagtaatctgcaagagcaaacataaagcatagtgacatattgagtgttatttagtagcactcactct |
11008933 |
T |
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| Q |
129 |
aacaaatgggtgtggaagatcgatgtaattgtaaataaaag-aaaattaagcaaccaacttg-aaaaaatagagtatctaaagcgcagaattgc--atat |
224 |
Q |
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| T |
11008934 |
aacaaatggatgtggaagatccacgcgattgtaaataatagaaaaattaagcatcgaaattgaaaaaaatagagtatataaatcgcacaactgcatatat |
11009033 |
T |
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| Q |
225 |
ataccaaccataattacagtgagcctggttat |
256 |
Q |
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| T |
11009034 |
ataccaaccatatttacagtgaggctggttat |
11009065 |
T |
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