View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19773_high_67 (Length: 251)
Name: NF19773_high_67
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_67 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 14851581 - 14851816
Alignment:
| Q |
1 |
caagagagacacacatgactttggttgtgttacactaatgatgaaaactatgtcaaagactgaaaaattaaagtttgtatgacaaagttcttannnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14851581 |
caagagagacacacatgactttggttgtgttacactaatgatgaaaactatgtcaaagactgaaaaattaaagtttgtatgacaaagttcttattttttt |
14851680 |
T |
|
| Q |
101 |
-gttttatnnnnnnnnngtgctatgaaaagtagagagtatgctctatgtttcattttctttaaaaacaatcacattaaaagtcacccatcttctactaac |
199 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14851681 |
tgttttataaaaaaaa-gtgctatgaaaagtagagtgt--gctctatgtttcattttctttaaaaacaatcaaattaaaagtcacccatcttctactaac |
14851777 |
T |
|
| Q |
200 |
attctgaattcaacagagattcttccaattgcagaagta |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14851778 |
attctgaattcaacagagattcttccaattgcagaagta |
14851816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University