View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_high_71 (Length: 250)
Name: NF19773_high_71
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_71 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 20414005 - 20413860
Alignment:
| Q |
87 |
agaaaaagggtattggagttttctctcatattctctataagtatacaaacatgcaaaatttgagagaaaaatgtatgcaatcttggcaattgaatggagg |
186 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20414005 |
agaaaaagggtatttgagttttctctcatattctctataagtatacaaacatgcaaaatttgagagaaaaatgtatgcaatcttggcaattgaatggagg |
20413906 |
T |
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| Q |
187 |
attggacaatttcaacaccacacaatttattttcattaaaatattt |
232 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20413905 |
attggacaatttccacaccacacaatttattttcattaaaatattt |
20413860 |
T |
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