View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19773_high_83 (Length: 229)
Name: NF19773_high_83
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_83 |
 | |
|
| [»] scaffold0927 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28573541 - 28573750
Alignment:
| Q |
1 |
aattttggccactgaatatatgacatttggaaacttttcatccaagatatcaattgtttgctttgttataccattaacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28573541 |
aatttttgccactgaatatatgacatttggaaacttttcatccaagatatcaattgttttctttgttataccattaacatgatccaacaggaagaatgca |
28573640 |
T |
|
| Q |
101 |
tgtacaagcacaacatgcactccagtgcttacaattccattgttcaagtaatcctctgctcttggcaagtgtccagaattcaaccaatgggcctcttcca |
200 |
Q |
| |
|
|||| |||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28573641 |
tgtataagcacaacatgaactccagtgctcacgattccattattcaagtaatcctctgctcttggcaagtgtccagaattcaaccaatgggcctcttcca |
28573740 |
T |
|
| Q |
201 |
tgaaagcgtt |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
28573741 |
tgaaagcgtt |
28573750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28584770 - 28584979
Alignment:
| Q |
1 |
aattttggccactgaatatatgacatttggaaacttttcatccaagatatcaattgtttgctttgttataccattaacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28584770 |
aatttttgccactgaatatatgacatttggaaacttttcatccaagatatcaattgtttgctttgttataccattaacatgatccaacaggaagaatgca |
28584869 |
T |
|
| Q |
101 |
tgtacaagcacaacatgcactccagtgcttacaattccattgttcaagtaatcctctgctcttggcaagtgtccagaattcaaccaatgggcctcttcca |
200 |
Q |
| |
|
|||| |||||||||||| ||||||||||| || |||||||| ||||||||||||||||| ||||||| ||| | ||||||||||||||| ||||| |||| |
|
|
| T |
28584870 |
tgtataagcacaacatgaactccagtgctcacgattccattattcaagtaatcctctgcccttggcaggtgactagaattcaaccaatgagcctcctcca |
28584969 |
T |
|
| Q |
201 |
tgaaagcgtt |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
28584970 |
tgaaagcgtt |
28584979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 26314683 - 26314892
Alignment:
| Q |
1 |
aattttggccactgaatatatgacatttggaaacttttcatccaagatatcaattgtttgctttgttataccattaacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26314683 |
aattttcgccactgaatatatgacatttgggaatttttcatccaagatatcaattgtctcctttgttataccatgaacatgatccaacaggaagaatgca |
26314782 |
T |
|
| Q |
101 |
tgtacaagcacaacatgcactccagtgcttacaattccattgttcaagtaatcctctgctcttggcaagtgtccagaattcaaccaatgggcctcttcca |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
26314783 |
tgtacaagcacaacatgcactccggtgctcacaattccattgttcaagtaatcctctgccctcggtaagtggccagaattcaaccaatgagcctcttcca |
26314882 |
T |
|
| Q |
201 |
tgaaagcgtt |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
26314883 |
tgaaagcgtt |
26314892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28566795 - 28567004
Alignment:
| Q |
1 |
aattttggccactgaatatatgacatttggaaacttttcatccaagatatcaattgtttgctttgttataccattaacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
28566795 |
aatttttgccactgaatatataacatttgggaaattttcatccaagatatcaattgtctcctttgttataccactaacatgatccaaaaggaagaatgca |
28566894 |
T |
|
| Q |
101 |
tgtacaagcacaacatgcactccagtgcttacaattccattgttcaagtaatcctctgctcttggcaagtgtccagaattcaaccaatgggcctcttcca |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
28566895 |
tgttcaagcacaacatgcactccagtgctcactattccattgtttaagtaatcctctgcttttggtaagtgaccagaattcaaccaatgagcctcttcca |
28566994 |
T |
|
| Q |
201 |
tgaaagcgtt |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
28566995 |
tgaaagcgtt |
28567004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 20615876 - 20616082
Alignment:
| Q |
1 |
aattttggccactgaatatatgacatttggaaacttttcatccaagatatcaattgtttgctttgttataccattaacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||| | |||||| |||||| || |||| |||||||||||| ||| ||||||||| |||||||| ||| |
|
|
| T |
20615876 |
aatttttgccactgaataaatgatatttggaaattcttcatctaagatagaaagagtttcctttgttatacccttagcatgatccatgaggaagaaagca |
20615975 |
T |
|
| Q |
101 |
tgtacaagcacaacatgcactccagtgcttacaattccattgttcaagtaatcctctgctcttggcaagtgtccagaattcaaccaatgggcctcttcca |
200 |
Q |
| |
|
|| | ||| |||||||| ||||| ||||| |||||||||||||||||||| ||||||| | |||| || ||||||||||||||||| ||||||| || |
|
|
| T |
20615976 |
tggataagtacaacatgaactcctgtgctcacaattccattgttcaagtattcctctgttgttggtaaaataccagaattcaaccaatgagcctctttca |
20616075 |
T |
|
| Q |
201 |
tgaaagc |
207 |
Q |
| |
|
|||||| |
|
|
| T |
20616076 |
agaaagc |
20616082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 24070225 - 24070434
Alignment:
| Q |
1 |
aattttggccactgaatatatgacatttggaaacttttcatccaagatatcaattgtttgctttgttataccattaacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24070225 |
aatttttgccaccgaatatatgacatttggaaatttttcatccaagatatcaactgtctcctttgttataccattaacatgatccaacaagaagaatgca |
24070324 |
T |
|
| Q |
101 |
tgtacaagcacaacatgcactccagtgcttacaattccattgttcaagtaatcctctgctcttggcaagtgtccagaattcaaccaatgggcctcttcca |
200 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| || | ||||||||||||| | |||||||||| |
|
|
| T |
24070325 |
tgtacaagcacaacatggactccggtgctcacaattccattgttcaagtaatcctctgcccttggcaaatgactagaattcaaccaacgagcctcttcca |
24070424 |
T |
|
| Q |
201 |
tgaaagcgtt |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
24070425 |
tgaaagcgtt |
24070434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 24080511 - 24080302
Alignment:
| Q |
1 |
aattttggccactgaatatatgacatttggaaacttttcatccaagatatcaattgtttgctttgttataccattaacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24080511 |
aatttttgccaccgaatatatgacatttggaaaattttcatccaagatatcaactgtctcctttgttataccattaacatgatccaacaagaagaatgca |
24080412 |
T |
|
| Q |
101 |
tgtacaagcacaacatgcactccagtgcttacaattccattgttcaagtaatcctctgctcttggcaagtgtccagaattcaaccaatgggcctcttcca |
200 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| || | ||||||||||||| | |||||||||| |
|
|
| T |
24080411 |
tgtacaagcacaacatggactccggtgctcacaattccattgttcaagtaatcctctgcccttggcaaatgactagaattcaaccaacgagcctcttcca |
24080312 |
T |
|
| Q |
201 |
tgaaagcgtt |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
24080311 |
tgaaagcgtt |
24080302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 155 - 1
Alignment:
| Q |
1 |
aattttggccactgaatatatgacatttggaaacttttcatccaagatatcaattgtttgctttgttataccattaacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155 |
aatttttgccactgaatatataacatttggaaaattttcatccaagatatcagttgtctcctttgttataccattaacatgatccaacaggaagaatgca |
56 |
T |
|
| Q |
101 |
tgtacaagcacaacatgcactccagtgcttacaattccattgttcaagtaatcct |
155 |
Q |
| |
|
||| ||||||||||||||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
55 |
tgttcaagcacaacatgcactccagtgctcactattccgttgttcaagtaatcct |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 2602745 - 2602636
Alignment:
| Q |
80 |
tgatccaacaggaagaatgcatgtacaagcacaacatgcactccagtgcttacaattccattgttcaagtaatcctctgctcttggcaagtgtccagaat |
179 |
Q |
| |
|
||||| || |||||||| ||||| ||||| || ||||||||||| | ||| |||||||||||||| ||||| || ||||| |||||||||| || |||| |
|
|
| T |
2602745 |
tgatcaaagaggaagaacgcatggacaagtaccacatgcactcctgggctaacaattccattgtttaagtactcatctgcctttggcaagtgacctgaat |
2602646 |
T |
|
| Q |
180 |
tcaaccaatg |
189 |
Q |
| |
|
||| |||||| |
|
|
| T |
2602645 |
tcagccaatg |
2602636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University