View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_high_86 (Length: 225)
Name: NF19773_high_86
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_86 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 15099709 - 15099503
Alignment:
| Q |
1 |
aaacaacagagccagctaaaaaatagtgatgacaataactatgctttgataattcaatcagacttaaaagcaaatatcaatggcacagcaacaacataga |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15099709 |
aaacaacagagctagctaaaaaatagtgatgacaataactatgctttgataattcaatcagacttaaaagcaaatatcaatggcacagcaacaacataga |
15099610 |
T |
|
| Q |
101 |
gcagcacaacatcccttccagaaaccatcacctctggtagtggtttggtctggaatcctttggttagggtatccttcagctggaccatcttttgtagggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15099609 |
gcagcacaacatcccttccagaaaccatcacctctggtagtggtttggtctggaatcctttggttagggtatccttcagctggaccatcttttgtagggt |
15099510 |
T |
|
| Q |
201 |
aacccat |
207 |
Q |
| |
|
||||||| |
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|
| T |
15099509 |
aacccat |
15099503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 15110944 - 15110738
Alignment:
| Q |
1 |
aaacaacagagccagctaaaaaatagtgatgacaataactatgctttgataattcaatcagacttaaaagcaaatatcaatggcacagcaacaacataga |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15110944 |
aaacaacagagctagctaaaaaatagtgatgacaataactatgctttgataattcaatcagacttaaaagcaaatatcaatggcacagcaacaacataga |
15110845 |
T |
|
| Q |
101 |
gcagcacaacatcccttccagaaaccatcacctctggtagtggtttggtctggaatcctttggttagggtatccttcagctggaccatcttttgtagggt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15110844 |
gcagcacaacatcccttccagaaaccatcacctctggtagtgctttggtctggaatcctttggttagggtatccttcagctggaccatcttttgtagggt |
15110745 |
T |
|
| Q |
201 |
aacccat |
207 |
Q |
| |
|
||||||| |
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|
| T |
15110744 |
aacccat |
15110738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 18616740 - 18616946
Alignment:
| Q |
1 |
aaacaacagagccagctaaaaaatagtgatgacaataactatgctttgataattcaatcagacttaaaagcaaatatcaatggcacagcaacaacataga |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18616740 |
aaacaacagagctagctaaaaaatagtgatgacaataactatgctttgataattcaatcagacttaaaagcaaatatcaatggcacagcaacaacataga |
18616839 |
T |
|
| Q |
101 |
gcagcacaacatcccttccagaaaccatcacctctggtagtggtttggtctggaatcctttggttagggtatccttcagctggaccatcttttgtagggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18616840 |
gcagcacaacatcccttccagaaaccatcacctctggtagtgctttggtctggaatcctttggttagggtatccttcagctggaccatcttttgtagggt |
18616939 |
T |
|
| Q |
201 |
aacccat |
207 |
Q |
| |
|
||||||| |
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|
| T |
18616940 |
aacccat |
18616946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 36059648 - 36059539
Alignment:
| Q |
54 |
tcaatcaga-cttaaaagcaaatatcaatggcacagcaacaacatagagcagcacaacatcccttccagaaaccatcacctctggtagtggtttggtctg |
152 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||||| || ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
36059648 |
tcaatcagaacttaaaagcagatatcaagggcacaacagcaacatagagcagcacaacatcctttccagaaaccatcacccctgctagtggtttggtctg |
36059549 |
T |
|
| Q |
153 |
gaatcctttg |
162 |
Q |
| |
|
|||||||||| |
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|
| T |
36059548 |
gaatcctttg |
36059539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 28862632 - 28862746
Alignment:
| Q |
62 |
acttaaaagcaaatatcaatggcacagcaacaacatagagcagcacaacatcccttccagaaaccatcacctctggtagtggtttggtctggaatccttt |
161 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |||| ||| |
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| T |
28862632 |
acttaaaagcatatatcaagggcacagcagcaacatatagcagcacaacatcccttccagaaaccatcacccctgctagtagtttggtctgaaatctttt |
28862731 |
T |
|
| Q |
162 |
ggttagggtatcctt |
176 |
Q |
| |
|
| | |||||| |||| |
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|
| T |
28862732 |
gttgagggtaccctt |
28862746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 28865611 - 28865497
Alignment:
| Q |
62 |
acttaaaagcaaatatcaatggcacagcaacaacatagagcagcacaacatcccttccagaaaccatcacctctggtagtggtttggtctggaatccttt |
161 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |||| ||| |
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| T |
28865611 |
acttaaaagcatatatcaagggcacagcagcaacatatagcagcacaacatcccttccagaaaccatcacccctgctagtagtttggtctgaaatctttt |
28865512 |
T |
|
| Q |
162 |
ggttagggtatcctt |
176 |
Q |
| |
|
| | |||||| |||| |
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|
| T |
28865511 |
gttgagggtaccctt |
28865497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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