View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_1 (Length: 826)
Name: NF19773_low_1
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 80 - 716
Target Start/End: Original strand, 40039374 - 40040002
Alignment:
| Q |
80 |
gtaattcaaaagtgcgtcgaatcaaaagagggagaagagaaaaagttttctattaacaaaataaaactcttggtgtatagaaaagggaggataaaagacc |
179 |
Q |
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| T |
40039374 |
gtaattcaaaagtgcgtcgaatcaaaagagggagaagagagaaagttttctat-aacagaataaaactcttggtgtatagaaaagggaggatgaaagacc |
40039472 |
T |
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| Q |
180 |
acttatatgatgttgaaaactaataaggtgtgtaaactaaaagatacgagacattaaannnnnnnctacttcaaattacactcataatacactctgctat |
279 |
Q |
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| T |
40039473 |
acttatatgatgttgaaaagtaataaggtgtgtaaactaaaagatacgagacattaa-cttttttctacttcaaattacactcataatacactctgctat |
40039571 |
T |
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| Q |
280 |
ccataataggactctagagtttttatttacaattcagaggtctatgttacnnnnnnnnnnncacaattaaaagtttggatgatgaataccctttctgata |
379 |
Q |
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| T |
40039572 |
ccttaataggactctagagtttttatttacaattcagaggtctatgttacaaaataaa---cacaattaaaagtttggataatgagtaccctttctgat- |
40039667 |
T |
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| Q |
380 |
tgatgtagtcttatatttttcccttagcggatatattttcttccaaaccacttaaatatacgaacttcgctgtcttcacaaactttccaccaataaccga |
479 |
Q |
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| T |
40039668 |
-gatgtagtcttatatttttcccttagcggatatattttcttccaaaccacttatatatacgaacttcgctgtcttcacaaactttccaccaataaccga |
40039766 |
T |
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| Q |
480 |
ccatatatggtgataagaactatatttcaaaatgtttattcttaataattggtaaaactaatacgtaatgaattatccaaaattgaattattcaacaaat |
579 |
Q |
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| T |
40039767 |
ccatatatggtgataagaactatatttcaaaatgtttattcttaataattggtaaaac-aatacgtaagaaattatccaaaattgaattattcaaccaat |
40039865 |
T |
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| Q |
580 |
tggnnnnnnnnacaagtattcaaccaatgattaattagtaatactgcatattgcatatatagttctattattgtacttgtttacttttagtcaatgatga |
679 |
Q |
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| T |
40039866 |
tggttttttttacacgtattcaaccaatgattaattagtaatactgcatattgcatatataattctattattgtacttgtttacttttagtcaatgatga |
40039965 |
T |
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| Q |
680 |
ttgagcgtgacctaaactttggataatgaagattata |
716 |
Q |
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| T |
40039966 |
ttgagcgtggcctaaactttggataatgaagattata |
40040002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 40039273 - 40039349
Alignment:
| Q |
2 |
tttctttggagagattaaattttttaaaaaggacagttattttgaagagactaaattacctataagggaaaaattat |
78 |
Q |
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| T |
40039273 |
tttctttggagagactaaattttttaaaaaggacagttattttgaagagactaaatttcttataagggaaaaattat |
40039349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 730 - 761
Target Start/End: Original strand, 40039986 - 40040017
Alignment:
| Q |
730 |
ggataatgaagattatatattgtctctttttt |
761 |
Q |
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| T |
40039986 |
ggataatgaagattatatattgtctctttttt |
40040017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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