View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_10 (Length: 566)
Name: NF19773_low_10
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 14 - 549
Target Start/End: Complemental strand, 23178413 - 23177878
Alignment:
| Q |
14 |
tgagatgaaacgttaggttataattatcaaaatttttataagaatcctcggttgatgtgatggttagagtcgatacttgatcattccataacatgcaggc |
113 |
Q |
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| T |
23178413 |
tgagatgaaacgttaggttataattatcaatatttttataagaatccccggttgatgtgatggttagagtcggtacttgatcattccataacatgcaggc |
23178314 |
T |
|
| Q |
114 |
accgttnnnnnnntcataagcataagcaacacaagagcaatcattgaagcaagtataattacactgtgctgcggtatccaccagcctgtgcacacgatga |
213 |
Q |
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| T |
23178313 |
accgtcaaaaaaatcataagcataagcaacacaagagcaatcattgaagcaagtataattacactgtgctccggtatccaccagcctgtgcacacgatga |
23178214 |
T |
|
| Q |
214 |
cgtcgaagtgatttcactgacatattaaaggatgagaaatatccatgtataatgttattgttgttgcaggacaacttctttatcctaacacatccaccag |
313 |
Q |
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| T |
23178213 |
cgtcgaagtgatttcactgacatattaaaggatgagaaatatccatgtttaatgttattgttgttgcaggacaacttctttatcctaacacatccaccag |
23178114 |
T |
|
| Q |
314 |
cactagactgtttaaaacctctgagacattgacaagggtcaggagtttgcggattacaaatggnnnnnnntccacatgaattgtttgtcgcacacgttga |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
23178113 |
cactagactgtttaaaacctctgagacattgacaagggtcaggagtttgcggattacaaatggaaaaaaatccacatgaattgtttgtcacacacgttga |
23178014 |
T |
|
| Q |
414 |
tgactgtagaaaaatccattgcttagattcctcataccaggcttggtatttaagatccccagacgcttctagtataaagcgagaattgctatcaattgga |
513 |
Q |
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| T |
23178013 |
tgaccgtagaaaaatccattgcttagattcctcataccaggcttggtatttaagatccccagacgcttctagtataaagcgagaagtgctatcaattgga |
23177914 |
T |
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| Q |
514 |
atagtagtatagttgttcaagccgtagctctgtttg |
549 |
Q |
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| T |
23177913 |
atagtagtatagttgttcaagccgtagctctgtttg |
23177878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 384 - 511
Target Start/End: Complemental strand, 23187175 - 23187048
Alignment:
| Q |
384 |
tccacatgaattgtttgtcgcacacgttgatgactgtagaaaaatccattgcttagattcctcataccaggcttggtatttaagatccccagacgcttct |
483 |
Q |
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||||||||||||||||||| ||||| | |||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23187175 |
tccacatgaattgtttgtcacacactgataaaactgtagaaaaatccattgcctatattcctcggaccaggcttggtatttaagatccccagacgcttct |
23187076 |
T |
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| Q |
484 |
agtataaagcgagaattgctatcaattg |
511 |
Q |
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| T |
23187075 |
aatataaaccgagaattgctattaattg |
23187048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 482
Target Start/End: Original strand, 21181878 - 21182025
Alignment:
| Q |
335 |
tgagacattgacaagggtcaggagtttgcggattacaaatggnnnnnnntccacatgaattgtttgtcgcacacgttgatgactgtagaaaaatccattg |
434 |
Q |
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||||||| ||||||||||| || ||||| ||||||||||| |||||| ||||||||||| | ||| | ||||| |||||| ||| ||| | |
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| T |
21181878 |
tgagacagtgacaagggtcgcgatcttgcgaattacaaatggaaaaaattccacaagaattgtttgttccgcacttggatgattgtagagaaacccaacg |
21181977 |
T |
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| Q |
435 |
cttagattcctcataccaggcttggtatttaagatccccagacgcttc |
482 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
21181978 |
cttagattcctctgaccagccttggtatttaagatccccagacacttc |
21182025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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