View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_102 (Length: 201)

Name: NF19773_low_102
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_102
NF19773_low_102
[»] chr1 (2 HSPs)
chr1 (93-185)||(34022129-34022221)
chr1 (12-61)||(34022284-34022333)
[»] chr7 (2 HSPs)
chr7 (106-176)||(14232127-14232197)
chr7 (107-176)||(14236902-14236971)
[»] chr6 (6 HSPs)
chr6 (107-176)||(22840623-22840689)
chr6 (107-176)||(22845396-22845462)
chr6 (132-185)||(34150898-34150951)
chr6 (132-185)||(34163514-34163567)
chr6 (107-135)||(34150853-34150881)
chr6 (107-135)||(34163469-34163497)
[»] chr3 (3 HSPs)
chr3 (107-176)||(19000281-19000347)
chr3 (133-176)||(5746888-5746931)
chr3 (133-176)||(5783847-5783890)
[»] chr2 (1 HSPs)
chr2 (132-185)||(27474387-27474440)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 34022221 - 34022129
Alignment:
Q  93 agaaaagattaaattatcaacatatgaagaaaataaagagcaagttaactaattagaagcatttgcatctacatttcatttctacttataatt 185  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34022221 agaaaagattaaattatcaacatatgaagaaaataaagagcaaattaactaattagaagcatttgcatctacatttcatttctaattataatt 34022129  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 34022333 - 34022284
Alignment:
Q  12 agaatataccaacgtctttagttttcgttaccacacctgcaaattagtta 61  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  34022333 agaatataccaacgtctttagttttagttaccacacctgcaaagtagtta 34022284  T

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Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 14232127 - 14232197
Alignment:
Q  106 ttatcaacatatgaagaaaataaagagcaagttaactaattagaagcatttgcatctacatttcatttcta 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||    
T  14232127 ttatcaacatatgaagaaaataaagagcaagttaactaattagaagtatttgcatttgcatttcatttcta 14232197  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 14236902 - 14236971
Alignment:
Q  107 tatcaacatatgaagaaaataaagagcaagttaactaattagaagcatttgcatctacatttcatttcta 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||    
T  14236902 tatcaacatatgaagaaaataaagagcaagttaactaattagaagtatttgcatttgcatttcatttcta 14236971  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 22840623 - 22840689
Alignment:
Q  107 tatcaacatatgaagaaaataaagagcaagttaactaattagaagcatttgcatctacatttcatttcta 176  Q
    |||||||||||||||||||   ||||||||||||||||||||||| |||||||| | |||||||||||||    
T  22840623 tatcaacatatgaagaaaa---agagcaagttaactaattagaagtatttgcatttgcatttcatttcta 22840689  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 22845396 - 22845462
Alignment:
Q  107 tatcaacatatgaagaaaataaagagcaagttaactaattagaagcatttgcatctacatttcatttcta 176  Q
    |||||||||||||||||||   ||||||||||||||||||||||| |||||||| | |||||||||||||    
T  22845396 tatcaacatatgaagaaaa---agagcaagttaactaattagaagtatttgcatttgcatttcatttcta 22845462  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 34150898 - 34150951
Alignment:
Q  132 gcaagttaactaattagaagcatttgcatctacatttcatttctacttataatt 185  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| || |||||    
T  34150898 gcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatt 34150951  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 34163514 - 34163567
Alignment:
Q  132 gcaagttaactaattagaagcatttgcatctacatttcatttctacttataatt 185  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| || |||||    
T  34163514 gcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatt 34163567  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 34150853 - 34150881
Alignment:
Q  107 tatcaacatatgaagaaaataaagagcaa 135  Q
    |||||||||||||||||||||||||||||    
T  34150853 tatcaacatatgaagaaaataaagagcaa 34150881  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 34163469 - 34163497
Alignment:
Q  107 tatcaacatatgaagaaaataaagagcaa 135  Q
    |||||||||||||||||||||||||||||    
T  34163469 tatcaacatatgaagaaaataaagagcaa 34163497  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 19000347 - 19000281
Alignment:
Q  107 tatcaacatatgaagaaaataaagagcaagttaactaattagaagcatttgcatctacatttcatttcta 176  Q
    |||||||||||||||||||   ||||||||||||||||||||||| |||||||| | |||||||||||||    
T  19000347 tatcaacatatgaagaaaa---agagcaagttaactaattagaagtatttgcatttgcatttcatttcta 19000281  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 5746931 - 5746888
Alignment:
Q  133 caagttaactaattagaagcatttgcatctacatttcatttcta 176  Q
    |||||||||||||||||||||||||||| |||||| ||||||||    
T  5746931 caagttaactaattagaagcatttgcatttacattccatttcta 5746888  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 5783890 - 5783847
Alignment:
Q  133 caagttaactaattagaagcatttgcatctacatttcatttcta 176  Q
    |||||||||||||||||||||||||||| |||||| ||||||||    
T  5783890 caagttaactaattagaagcatttgcatttacattccatttcta 5783847  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 27474387 - 27474440
Alignment:
Q  132 gcaagttaactaattagaagcatttgcatctacatttcatttctacttataatt 185  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| || |||||    
T  27474387 gcaagttaactaattagaagcatttgcatttacatttcatttctaattgtaatt 27474440  T

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