View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_12 (Length: 560)
Name: NF19773_low_12
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 8873134 - 8873370
Alignment:
| Q |
10 |
aagaaaatccaaacatgcccttgtatacaaaaccaaaaaagattggatttttaacatgaaaatctcaaaagaaaggattttgaagaaaagggtataagaa |
109 |
Q |
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| T |
8873134 |
aagaaaatccaaacatgcccttgtatacaaaaccaaaaaagattggatttttaacatgaaaatttcaaaagaaaggattttgaagaaaagggtataagaa |
8873233 |
T |
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| Q |
110 |
tttgacatcaaatttcataaagaatgattgaaaagttcataccctttgaacatatgaagagggcatgagagacctaagaacactgagatgatcattcatt |
209 |
Q |
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| T |
8873234 |
tttgacatcaaatttcataaagaatgattgaaaagttcataccctttgaacatatgaagagggcatgagagacctaagaacactgagatgatcattcatt |
8873333 |
T |
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| Q |
210 |
tggcgtctcctattacgttcaacagcaatgtgtgtca |
246 |
Q |
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| T |
8873334 |
tggcgtctcctattacgttcaacagcaatgtgtgtca |
8873370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 329 - 546
Target Start/End: Original strand, 8873453 - 8873670
Alignment:
| Q |
329 |
agatttggaacatgattgtgctgtttttgtttcttcttgttggttacattcatagcttgttttctcaatgcatgaagttgaaagtgaaactttattgctt |
428 |
Q |
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| T |
8873453 |
agatttggaacatgattgtgctgtttttgtttcttcttgttggttacattcatagcttgttttctcaatgcatgaagttgaaagtgaaactttattgctt |
8873552 |
T |
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| Q |
429 |
tctgatttcactggtgattgcatctccaacatttcttgtgttacacagctttcaaattccaatgttgtgccttgaacttgttgtgaatccattataggaa |
528 |
Q |
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| T |
8873553 |
tctgatttcactggtgattgcatctccaacatttcttgtgttacgcagctttcaaattccaatgttgtgccttgaacttgttgtgaatccattctaggaa |
8873652 |
T |
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| Q |
529 |
tgtaagctatgtcttccc |
546 |
Q |
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| T |
8873653 |
tgtaagctatgtcttccc |
8873670 |
T |
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