View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19773_low_16 (Length: 539)
Name: NF19773_low_16
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 22 - 535
Target Start/End: Complemental strand, 49522041 - 49521528
Alignment:
| Q |
22 |
cagcgtacatttttcgaccagagacaaggttgtagtgttactttataccaagacgctcacgtccctgagagtgttcatccgtggattccaatatctggaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49522041 |
cagcgtacatttttcgaccagagacaaggttgtagtgttactttataccaagacgctcacgtccctgagagtgttcatccgtggattccaatatctggaa |
49521942 |
T |
|
| Q |
122 |
caaaatattatgtacctggaagatgttgggaagatatttacaatgccattatgaatgctaaagtctttatttacataactggttggtctgttcatgcaga |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49521941 |
caaaatattatgtacctggaagatgttgggaagatatttacaatgccattatgaatgctaaagtctttatttacataactggttggtctgttcatacaga |
49521842 |
T |
|
| Q |
222 |
aataaccttgattagggacccaaacaagacaacagaaagtagtatcaccctaggagaaatgctcaagaaaaaagccaatgaaggtgttaatgttcttgtg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49521841 |
aataaccttgattagggacccaaacaagacaacagaaagtagtatcaccctaggagaaatgctcaagaaaaaagccaacgaaggtgttaatgttcttgtg |
49521742 |
T |
|
| Q |
322 |
cttgtttgggatgacagaacctctgttccggcttttaagaaagacggtttgatgggaacacatgaccaagaaactgcagagtattttaaaaacacaaagg |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49521741 |
cttgtttgggatgacagaacctctgttccggcttttaagaaagacggtttgatgggaacacatgaccaagaaactgcagagtattttaagaacacaaagg |
49521642 |
T |
|
| Q |
422 |
tacattgtgttttatgtccgcgtaaccctgatggtggaaaaagcatagttcaaggttttgaaacttcaactatgttcactcatcaccaaaagactatagt |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49521641 |
tacattgtgttttatgtccgcgtaaccctgatggtggaaaaagcatagttcaaggttttgaaacttcaactatgttcactcatcaccaaaagactatagt |
49521542 |
T |
|
| Q |
522 |
tgatgatgtccatc |
535 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
49521541 |
tgttgatggccatc |
49521528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 130 - 519
Target Start/End: Complemental strand, 49510989 - 49510600
Alignment:
| Q |
130 |
tatgtacctggaagatgttgggaagatatttacaatgccattatgaatgctaaagtctttatttacataactggttggtctgttcatgcagaaataacct |
229 |
Q |
| |
|
||||| || |||| |||||||||||||| || |||||| |||| ||||||| ||||||| ||||||||||||||||||| | | |||||||||| |
|
|
| T |
49510989 |
tatgtgccgggaaaatgttgggaagatacttgcaatgcaattaatgatgctaagcattttatttgcataactggttggtctgtttacacggaaataacct |
49510890 |
T |
|
| Q |
230 |
tgattagggacccaaacaagacaacagaaagtagtatcaccctaggagaaatgctcaagaaaaaagccaatgaaggtgttaatgttcttgtgcttgtttg |
329 |
Q |
| |
|
||||||| || |||||| || ||||| | | ||||| || || || | || ||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49510889 |
tgattagagatccaaacgagtcaacaagagcaaccatcactcttggggagcttcttaagaagaaagccaatgaaggtgttaatgttcttatgcttgtttg |
49510790 |
T |
|
| Q |
330 |
ggatgacagaacctctgttccggcttttaagaaagacggtttgatgggaacacatgaccaagaaactgcagagtattttaaaaacacaaaggtacattgt |
429 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||| || ||||||| ||| ||||| |||||||| ||||||||||||| ||||||||| || |||||| |
|
|
| T |
49510789 |
ggatgacagaacttctgttcctgactttaagaaagatggcttgatggcaactcatgatcaagaaacagcagagtattttagaaacacaaatgtccattgt |
49510690 |
T |
|
| Q |
430 |
gttttatgtccgcgtaaccctgatggtggaaaaagcatagttcaaggttttgaaacttcaactatgttcactcatcaccaaaagactata |
519 |
Q |
| |
|
||||| || |||||||| |||| || ||||| ||| ||||||||||||||||||| || ||||||||||||||||||||| ||||||||| |
|
|
| T |
49510689 |
gttttgtgcccgcgtaaacctggtgatggaagaagtatagttcaaggttttgaaattttaactatgttcactcatcaccagaagactata |
49510600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University