View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_19 (Length: 509)
Name: NF19773_low_19
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 24 - 492
Target Start/End: Original strand, 38568844 - 38569312
Alignment:
| Q |
24 |
gtaactgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgatatgcaggtgttc |
123 |
Q |
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| T |
38568844 |
gtaactgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgatatgcaggtgttc |
38568943 |
T |
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| Q |
124 |
ggacacgacactccctgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggttttatgttaccttggt |
223 |
Q |
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| T |
38568944 |
ggacacgacactccccgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggttttatgttaccttggt |
38569043 |
T |
|
| Q |
224 |
cacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgataggtaaacccaaaccattt |
323 |
Q |
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| T |
38569044 |
cacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgataggtaaacccaaaccattt |
38569143 |
T |
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| Q |
324 |
ccaatagcaccaatagtaccaacaatcattaacagaatgtcagtggaatctgcaaaagagaataatttgtgaaatggtactgtctcttgtttttcttttg |
423 |
Q |
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| T |
38569144 |
ccaatagcaccaatagtaccaacaatcattaacagaatgtcagtggaatctgcaaaagagaataatttgtgaaatggtactgtctcttgtttttcttttg |
38569243 |
T |
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| Q |
424 |
ttatgtccttttcgccgtttgtagtagcatttgtacttgtttctgtacgattattctctgacgttgttg |
492 |
Q |
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| T |
38569244 |
ttatgtccttttcgccgtttgtagtagcatttgtacttgtttctgtacgattattctctgacgttgttg |
38569312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 208 - 492
Target Start/End: Original strand, 38527615 - 38527902
Alignment:
| Q |
208 |
tttatgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgatagg |
307 |
Q |
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|||||| |||||||| |||||| || |||| || ||||||| ||||||||||||| ||||||| |||||||||||||| | | |||||| | ||| |
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| T |
38527615 |
tttatgataccttggacacttgttctacaacatcggtggtgttactttggttactaccaaaactatcaatcatttgaccgaacaataatgtcataagagg |
38527714 |
T |
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| Q |
308 |
taaacccaaaccatttccaatagcaccaatagtaccaacaatcattaacagaatgtcagtggaatctgcaaaagagaataatttgtgaaatggtactgtc |
407 |
Q |
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| T |
38527715 |
taaacccaaaccgtttccaatagcaccgatagtaccaacaatcattaataaaatgtcagtagaatctgcaaaagtgaatagtttgtgaaatggaactgtc |
38527814 |
T |
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| Q |
408 |
tcttgtttttcttttgttatgtccttttcgccgtttgtagtagcatttg---tacttgtttctgtacgattattctctgacgttgttg |
492 |
Q |
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| T |
38527815 |
tcttgtttttcttttgttttgtccttttcgccgtttgtaacaacatttgtactacttgtttctgttgaatttttctctgacgttgttg |
38527902 |
T |
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