View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_2 (Length: 811)

Name: NF19773_low_2
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_2
NF19773_low_2
[»] chr3 (9 HSPs)
chr3 (29-796)||(33384792-33385557)
chr3 (356-796)||(33383661-33384101)
chr3 (356-796)||(33384228-33384668)
chr3 (161-328)||(8714943-8715110)
chr3 (161-328)||(9066830-9066997)
chr3 (188-281)||(17628148-17628241)
chr3 (130-192)||(21022387-21022449)
chr3 (466-630)||(33090583-33090747)
chr3 (222-280)||(20589540-20589597)
[»] chr1 (5 HSPs)
chr1 (155-342)||(17775316-17775502)
chr1 (133-327)||(20421321-20421515)
chr1 (147-342)||(10014536-10014730)
chr1 (223-286)||(34483427-34483490)
chr1 (217-267)||(17621020-17621070)
[»] scaffold0015 (1 HSPs)
scaffold0015 (193-329)||(61310-61446)
[»] chr7 (7 HSPs)
chr7 (175-329)||(15964303-15964456)
chr7 (183-329)||(3090449-3090596)
chr7 (40-113)||(27222509-27222582)
chr7 (27-62)||(21896031-21896066)
chr7 (21-61)||(15964045-15964085)
chr7 (128-208)||(16758819-16758899)
chr7 (27-62)||(21914990-21915025)
[»] chr8 (3 HSPs)
chr8 (133-276)||(8838754-8838896)
chr8 (128-261)||(17747094-17747227)
chr8 (242-342)||(17746981-17747081)
[»] chr6 (1 HSPs)
chr6 (223-335)||(16174087-16174198)
[»] chr5 (2 HSPs)
chr5 (200-342)||(19412163-19412304)
chr5 (540-621)||(13583922-13584003)
[»] chr4 (2 HSPs)
chr4 (21-138)||(25228840-25228957)
chr4 (221-267)||(21414022-21414068)


Alignment Details
Target: chr3 (Bit Score: 646; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 29 - 796
Target Start/End: Complemental strand, 33385557 - 33384792
Alignment:
Q  29 agattgacatggatcagcttctgatctcatatttccttaatgagtcttgttcttcaatattgtagtgcatatgatatgcttctgatctcattctaaagcg 128  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  33385557 agattgacatggatcaacttctgatctcatattttcttaatgagtcttgttcttcaatattgtagtgcat--gatatgcttctgatctcattctaaagcg 33385460  T
Q  129 cttctgatctcattctgaagtgcttctgatattttttaagtccttcttagcacctggtgttgttgagattcatgtttctttcgatgtatatgcatttgta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  33385459 cttctgatctcattctgaagtgcttctgatattttttaagtccttcttagcacctggtgttgttgagattcttgtttctttcgatatatatgcatttgta 33385360  T
Q  229 atatcattttctaaagagcacttaaagaaacttgttagaaaacaacatatattagaataaccttgatctatttatttcaataaagtttgttatcattaaa 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33385359 atatcattttctaaagagcacttaaagaaacttgttagaaaacaacatatattagaataaccttgatctatttatttcaataaagtttgttatcattaaa 33385260  T
Q  329 agatcaatttaagatggannnnnnnnnattatcatcaacacctcgttcattagaaattgagaatctagattatttcttatctcagtagcatacaccacat 428  Q
    |||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||    
T  33385259 agatcaatttaagatgaatttttttttattatcatcaacacctcgttcattagaaattgagaatctagattatttcttatctctggagcatacaacacat 33385160  T
Q  429 ccttgagaaataacnnnnnnn-gggatgtgaattgcaactccacgtctctaattccaacaactttaatgatgtgcggatgtcccgacaacactttcatat 527  Q
    |||| |||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  33385159 ccttaagaaataacttttttttgggatgtgaattgcaactccacgtctctaattccaacaactttaatgatgtgcggatgtcccaacaacattttcatat 33385060  T
Q  528 cttgagcacctttgtatgttttaaacatagcatgatcataacaaacatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaacatagtt 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33385059 cttgagcacctttgtatgttttaaacatagcatgatcataacaaatatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaacatagtt 33384960  T
Q  628 gatcttagtaatcctagtaattaattactagtcactcaaggtggcttgcggagtatatatgatcttgtttcccacaactatatatagcaagtgaattgtg 727  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33384959 gatcttagtaatcctagtaattaattactagtcactcaaggtggcttgcggagtatatatgatcttgtttcccacaactatatatagcaagtgaattgtg 33384860  T
Q  728 acctagtgtcatttcttgaaggtggttgtcgatttacattttggatccttaaaaggttcccttgttatg 796  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33384859 acctagtgtcatttcttgaaggtggttgtcgatttacattttggatcctt-aaaggttcccttgttatg 33384792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 356 - 796
Target Start/End: Complemental strand, 33384101 - 33383661
Alignment:
Q  356 attatcatcaacacctcgttcattagaaattgagaatctagattatttcttatctcagtagcatacaccacatccttgagaaataacnnnnnnn-gggat 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |||||||||        |||||    
T  33384101 attatcatcaacacctcgttcattagaaattgagaatctagattatttcttatctctggagcatacaacacatccttaagaaataacttttttttgggat 33384002  T
Q  455 gtgaattgcaactccacgtctctaattccaacaactttaatgatgtgcggatgtcccgacaacactttcatatcttgagcacctttgtatgttttaaaca 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  33384001 gtgaattgcaactccacgtctctaattccaacaactttaatgatgtgcggatgtcccaacaacattttcatatcttgagcacctttgtatgttttaaaca 33383902  T
Q  555 tagcatgatcataacaaacatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaacatagttgatcttagtaatcctagtaattaatta 654  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33383901 tagcatgatcataacaaatatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaacatagttgatcttagtaatcctagtaattaatta 33383802  T
Q  655 ctagtcactcaaggtggcttgcggagtatatatgatcttgtttcccacaactatatatagcaagtgaattgtgacctagtgtcatttcttgaaggtggtt 754  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33383801 ctagtcactcaaggtggcttgcggagtatatatgatcttgtttcccacaactatatatagcaagtgaattgtgacctagtgtcatttcttgaaggtggtt 33383702  T
Q  755 gtcgatttacattttggatccttaaaaggttcccttgttatg 796  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  33383701 gtcgatttacattttggatcctt-aaaggttcccttgttatg 33383661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 356 - 796
Target Start/End: Complemental strand, 33384668 - 33384228
Alignment:
Q  356 attatcatcaacacctcgttcattagaaattgagaatctagattatttcttatctcagtagcatacaccacatccttgagaaataacnnnnnnn-gggat 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |||||||||        |||||    
T  33384668 attatcatcaacacctcgttcattagaaattgagaatctagattatttcttatctctggagcatacaacacatccttaagaaataacttttttttgggat 33384569  T
Q  455 gtgaattgcaactccacgtctctaattccaacaactttaatgatgtgcggatgtcccgacaacactttcatatcttgagcacctttgtatgttttaaaca 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  33384568 gtgaattgcaactccacgtctctaattccaacaactttaatgatgtgtggatgtcccaacaacattttcatatcttgagcacctttgtatgttttaaaca 33384469  T
Q  555 tagcatgatcataacaaacatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaacatagttgatcttagtaatcctagtaattaatta 654  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33384468 tagcatgatcataacaaatatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaacatagttgatcttagtaatcctagtaattaatta 33384369  T
Q  655 ctagtcactcaaggtggcttgcggagtatatatgatcttgtttcccacaactatatatagcaagtgaattgtgacctagtgtcatttcttgaaggtggtt 754  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33384368 ctagtcactcaaggtggcttgcggagtatatatgatcttgtttcccacaactatatatagcaagtgaattgtgacctagtgtcatttcttgaaggtggtt 33384269  T
Q  755 gtcgatttacattttggatccttaaaaggttcccttgttatg 796  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  33384268 gtcgatttacattttggatcctt-aaaggttcccttgttatg 33384228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 328
Target Start/End: Original strand, 8714943 - 8715110
Alignment:
Q  161 tttttaagtccttcttagcacctggtgttgttgagattcatgtttctttcgatgtatatgcatttgtaatatcattttctaaagagcacttaaagaaact 260  Q
    |||| ||||| |||||||||  |||| || |||||||||||||||  || ||| | || |||||||||||||| ||||||||  | ||||| ||||||||    
T  8714943 ttttgaagtctttcttagcatttggtattattgagattcatgtttaatttgatatctacgcatttgtaatatctttttctaacaaacacttgaagaaact 8715042  T
Q  261 tgttagaaaacaacatatattagaataaccttgatctatttatttcaataaagtttgttatcattaaa 328  Q
    | ||||| ||||||| |||| ||||| ||  ||||||  ||| || ||  |||||||||||| |||||    
T  8715043 ttttagagaacaacacatatcagaatcactctgatctcattactttaacgaagtttgttatctttaaa 8715110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 328
Target Start/End: Original strand, 9066830 - 9066997
Alignment:
Q  161 tttttaagtccttcttagcacctggtgttgttgagattcatgtttctttcgatgtatatgcatttgtaatatcattttctaaagagcacttaaagaaact 260  Q
    |||| ||||| |||||||||  |||| || |||||||||||||||  || ||| | || |||||||||||||| ||||||||  | ||||| ||||||||    
T  9066830 ttttgaagtctttcttagcatttggtattattgagattcatgtttaatttgatatctacgcatttgtaatatctttttctaacaaacacttgaagaaact 9066929  T
Q  261 tgttagaaaacaacatatattagaataaccttgatctatttatttcaataaagtttgttatcattaaa 328  Q
    | ||||| ||||||| |||| ||||| ||  ||||||  ||| || ||  |||||||||||| |||||    
T  9066930 ttttagagaacaacacatatcagaatcactctgatctcattactttaacgaagtttgttatctttaaa 9066997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 17628241 - 17628148
Alignment:
Q  188 ttgttgagattcatgtttctttcgatgtatatgcatttgtaatatcattttctaaagagcacttaaagaaacttgttagaaaacaacatatatt 281  Q
    ||||||| ||||||||| |||| ||| |  |||||||||||||||||| || |||||| |||||  ||||| ||||||||| |||||| |||||    
T  17628241 ttgttgatattcatgttactttagatattaatgcatttgtaatatcatgttttaaagaacacttgcagaaaattgttagaacacaacaaatatt 17628148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 21022449 - 21022387
Alignment:
Q  130 ttctgatctcattctgaagtgcttctgatattttttaagtccttcttagcacctggtgttgtt 192  Q
    |||||||||||||||||||| ||||||||  |||| |||||||||| | ||| ||||||||||    
T  21022449 ttctgatctcattctgaagtacttctgatcattttgaagtccttctcaacacttggtgttgtt 21022387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 466 - 630
Target Start/End: Complemental strand, 33090747 - 33090583
Alignment:
Q  466 ctccacgtctctaattccaacaactttaatgatgtgcggatgtcccgacaacactttcatatcttgagcacctttgtatgttttaaacatagcatgatca 565  Q
    |||||| |||| ||||||| |||||||| || |||| | || ||||  ||||||||||  ||| | ||||    ||||||| |||||||||||| | |||    
T  33090747 ctccacttctccaattccagcaactttagtggtgtgagaatctcccagcaacactttctgatcatcagcagtagtgtatgtcttaaacatagcacggtca 33090648  T
Q  566 taacaaacatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaacatagttgat 630  Q
     ||||||||||| | ||||| |||||||| |||||| | | ||  |||||||||||  |||||||    
T  33090647 aaacaaacatggcgagaggcgccagtgtctatccaccatccatcagatccaccaactaagttgat 33090583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 20589597 - 20589540
Alignment:
Q  222 atttgtaatatcattttctaaagagcacttaaagaaacttgttagaaaacaacatatat 280  Q
    |||||||||||| | || |||||| |||| ||||||||||||||||||| |||||||||    
T  20589597 atttgtaatatcttgttttaaagaacactcaaagaaacttgttagaaaa-aacatatat 20589540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 1e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 155 - 342
Target Start/End: Complemental strand, 17775502 - 17775316
Alignment:
Q  155 tgatattttttaagtccttcttagcacctggtgttgttgagattcatgtttctttcgatgtatatgcatttgtaatatcattttctaaagagcacttaaa 254  Q
    |||||||||| ||||| |||||||||| |||||||||| |||||||||||||||  ||| | ||||||||| |||||||   ||||||||| |||| |||    
T  17775502 tgatatttttgaagtcattcttagcacttggtgttgttaagattcatgtttcttg-gatatctatgcatttttaatatctcattctaaagaacactcaaa 17775404  T
Q  255 gaaacttgttagaaaacaacatatattagaataaccttgatctatttatttcaataaagtttgttatcattaaaagatcaatttaaga 342  Q
     ||||||||||||  |||||||| || |||||||  ||||||| |||| |||||| ||||||||||||| ||||| ||||| ||||||    
T  17775403 taaacttgttagaccacaacatagatcagaataatattgatctctttaattcaattaagtttgttatcagtaaaacatcaacttaaga 17775316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 133 - 327
Target Start/End: Original strand, 20421321 - 20421515
Alignment:
Q  133 tgatctcattctgaagtgcttctgatattttttaagtccttcttagcacctggtgttgttgagattcatgtttctttcgatgtatatgcatttgtaatat 232  Q
    |||| |||||||  |||||||||||   || | |||||||||||| ||| || |||||||||||||||||||||||| ||| | | |||| |||||||||    
T  20421321 tgatttcattctagagtgcttctgaccattctaaagtccttcttaacacttgatgttgttgagattcatgtttctttagatatttgtgcacttgtaatat 20421420  T
Q  233 cattttctaaagagcacttaaagaaacttgttagaaaacaacatatattagaataaccttgatctatttatttcaataaagtttgttatcattaa 327  Q
    ||| ||||| | |   |||||| |||||||||| ||||||||| |||| ||||| |  ||||||||||||||| ||| |||||||||||||||||    
T  20421421 catgttctagaaaatgcttaaaaaaacttgttaaaaaacaacacatataagaatcaatttgatctatttatttaaatgaagtttgttatcattaa 20421515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 147 - 342
Target Start/End: Original strand, 10014536 - 10014730
Alignment:
Q  147 agtgcttctgatattttttaagtccttcttagcacctggtgttgttgagattcatgtttctttcgatgtatatgcatttgtaatatcattttctaaagag 246  Q
    |||||||||||   || |||||||||||||||||| ||||||||||||||||||||||||||  ||| | | ||||||||||||||||| ||||| |||     
T  10014536 agtgcttctgaccattcttaagtccttcttagcacttggtgttgttgagattcatgtttcttaagatatttgtgcatttgtaatatcatgttctagagaa 10014635  T
Q  247 cacttaaagaaacttgttagaaaacaacatatattagaataaccttgatctatttatttcaataaagtttgttatcattaaaagatcaatttaaga 342  Q
      ||| ||     || ||| |||||||||  | | | ||| |  ||||||||||||||||||| ||||||||||||||||||| | ||| ||||||    
T  10014636 tgctt-aattttttttttaaaaaacaacacttttcataatcaatttgatctatttatttcaatgaagtttgttatcattaaaataccaacttaaga 10014730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 34483427 - 34483490
Alignment:
Q  223 tttgtaatatcattttctaaagagcacttaaagaaacttgttagaaaacaacatatattagaat 286  Q
    ||||||||||| | ||  ||||| |||| ||||||||||||||||||| |||||||||||||||    
T  34483427 tttgtaatatcctgtttcaaagaacactcaaagaaacttgttagaaaataacatatattagaat 34483490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 17621070 - 17621020
Alignment:
Q  217 tatgcatttgtaatatcattttctaaagagcacttaaagaaacttgttaga 267  Q
    ||||||||||||||||||| |||||| |  |||| ||||||||||||||||    
T  17621070 tatgcatttgtaatatcatgttctaacggacactcaaagaaacttgttaga 17621020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 193 - 329
Target Start/End: Original strand, 61310 - 61446
Alignment:
Q  193 gagattcatgtttctttcgatgtatatgcatttgtaatatcattttctaaagagcacttaaagaaacttgttagaaaacaacatatattagaataacctt 292  Q
    |||||||||||||||||  || | | | ||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||| |||| ||||| |   |    
T  61310 gagattcatgtttctttgaatatttgtacatttgtaatatctttttctaaagaacacttaatgaaatttgttagaaaacaacacatatcagaatcattct 61409  T
Q  293 gatctatttatttcaataaagtttgttatcattaaaa 329  Q
    ||||| |||| ||  |||||||||||||||| |||||    
T  61410 gatctctttaattagataaagtttgttatcaataaaa 61446  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 175 - 329
Target Start/End: Original strand, 15964303 - 15964456
Alignment:
Q  175 ttagcacctggtgttgttgagattcatgtttctttcgatgtatatgcatttgtaatatcattttctaaagagcacttaaagaaacttgttagaaaacaac 274  Q
    ||||||| |||||||||| || ||||||||||||  ||| ||| ||||||||||||||| || ||||||||  |||||||||||||||| |||  |||||    
T  15964303 ttagcacatggtgttgttaaggttcatgtttcttg-gatatatgtgcatttgtaatatccttctctaaagaaaacttaaagaaacttgtcagatcacaac 15964401  T
Q  275 atatattagaataaccttgatctatttatttcaataaagtttgttatcattaaaa 329  Q
    | |||| | ||| |     |||| |||| | ||||||||||||||||||||||||    
T  15964402 acatatcataattatacaaatctctttaatacaataaagtttgttatcattaaaa 15964456  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 329
Target Start/End: Original strand, 3090449 - 3090596
Alignment:
Q  183 tggtgttgttgagattcatgtttctttcgatgtatatgcatttgtaatatcattttctaaagagcacttaaagaaa-cttgttagaaaacaacatatatt 281  Q
    |||||||||| ||||||||||||||||  || | | ||||| ||||||||||| ||||| | | ||||| |||||| | ||||||||| ||||| ||||     
T  3090449 tggtgttgttaagattcatgtttctttgaatatttgtgcatctgtaatatcatgttctacataacacttgaagaaagcatgttagaaagcaacacatatc 3090548  T
Q  282 agaataaccttgatctatttatttcaataaagtttgttatcattaaaa 329  Q
    | | | ||| |||| | |||| || ||| |||||||||||||||||||    
T  3090549 aaattcaccctgatatctttaatttaatgaagtttgttatcattaaaa 3090596  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 27222582 - 27222509
Alignment:
Q  40 gatcagcttctgatctcatatttccttaatgagtcttgttcttcaatattgtagtgcatatgatatgcttctga 113  Q
    ||||| |||||||||||||||||||||  | | | ||||||||||||||||||||||| |||| ||| ||||||    
T  27222582 gatcaacttctgatctcatatttccttggtaaattttgttcttcaatattgtagtgcacatgagatgattctga 27222509  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 21896031 - 21896066
Alignment:
Q  27 taagattgacatggatcagcttctgatctcatattt 62  Q
    ||||||||||||||||||||||||||||||||||||    
T  21896031 taagattgacatggatcagcttctgatctcatattt 21896066  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 15964045 - 15964085
Alignment:
Q  21 tgttcctaagattgacatggatcagcttctgatctcatatt 61  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  15964045 tgttcataagattgacatggataagcttctgatctcatatt 15964085  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 16758819 - 16758899
Alignment:
Q  128 gcttctgatctcattctgaagtgcttctgatattttttaagtccttcttagcacctggtgttgttgagattcatgtttctt 208  Q
    |||||| |||||||||||||||  |||||||  |||| |||| ||| ||||| |  ||||||||| |||||||||||||||    
T  16758819 gcttctcatctcattctgaagtagttctgatcattttgaagttcttattagccctcggtgttgttaagattcatgtttctt 16758899  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 21914990 - 21915025
Alignment:
Q  27 taagattgacatggatcagcttctgatctcatattt 62  Q
    ||||||||| ||||||||||||||||||||||||||    
T  21914990 taagattgaaatggatcagcttctgatctcatattt 21915025  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 133 - 276
Target Start/End: Original strand, 8838754 - 8838896
Alignment:
Q  133 tgatctcattctgaagtgcttctgatattttttaagtccttcttagcacctggtgttgttgagattcatgtttctttcgatgtatatgcatttgtaatat 232  Q
    ||||||||||||||||| | ||| ||  |||| |||||||| ||||||| ||||||| || |||| ||||||||||  ||| ||||||||||||||||||    
T  8838754 tgatctcattctgaagtacatct-atcattttgaagtcctttttagcacttggtgttattaagatccatgtttcttg-gatatatatgcatttgtaatat 8838851  T
Q  233 cattttctaaagagcact-taaagaaacttgttagaaaacaacat 276  Q
    |   ||||||||| ||||  ||| |||||||||||| ||||||||    
T  8838852 ccaattctaaagaacactaaaaaaaaacttgttagataacaacat 8838896  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 17747227 - 17747094
Alignment:
Q  128 gcttctgatctcattctgaagtgcttctgatattttttaagtccttcttagcacctggtgttgttgagattcatgtttctttcgatgtatatgcatttgt 227  Q
    ||||||||||||||| |||||||||| |||| ||| |   |||||||||||||| ||||| | || ||||||||||||| |  ||| | | |||||||||    
T  17747227 gcttctgatctcattttgaagtgcttttgatttttatgttgtccttcttagcacttggtgctattaagattcatgtttcatcagatatttttgcatttgt 17747128  T
Q  228 aatatcattttctaaagagcacttaaagaaactt 261  Q
     ||||| |||| | |||| ||||||||| |||||    
T  17747127 tatatccttttgtcaagaacacttaaagtaactt 17747094  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 342
Target Start/End: Complemental strand, 17747081 - 17746981
Alignment:
Q  242 aagagcacttaaagaaacttgttagaaaacaacatatattagaataaccttgatctatttatttcaataaagtttgttatcattaaaagatcaatttaag 341  Q
    |||| ||||||||| ||||||||||   ||||||  ||||||||| |  ||||||  ||||||||||| ||||||||||||||| ||| ||||| |||||    
T  17747081 aagaacacttaaagtaacttgttaggtcacaacacttattagaatcatattgatcactttatttcaatgaagtttgttatcattgaaacatcaacttaag 17746982  T
Q  342 a 342  Q
    |    
T  17746981 a 17746981  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 16174087 - 16174198
Alignment:
Q  223 tttgtaatatcattttctaaagagcacttaaagaaacttgttagaaaacaacatatattagaataaccttgatctatttat-ttcaataaagtttgttat 321  Q
    ||||||||||||| ||||||||| |||| |||||||||||||||||| ||||| |||| | ||| |  ||||||  ||||| |||||| |||||| ||||    
T  16174087 tttgtaatatcatattctaaagaacactcaaagaaacttgttagaaatcaacacatatcataatcattttgatc--tttatgttcaattaagttttttat 16174184  T
Q  322 cattaaaagatcaa 335  Q
    |||||||| |||||    
T  16174185 cattaaaacatcaa 16174198  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 342
Target Start/End: Original strand, 19412163 - 19412304
Alignment:
Q  200 atgtttctttcgatgtatatgcatttgtaatatcattttctaaagagcacttaaagaaacttgttagaaaacaa-catatattagaataaccttgatcta 298  Q
    |||||||||  ||| | ||||||| | ||||||||| || |||| | |||||||| |||||||||||||||| | || | ||  || | |  |||||||     
T  19412163 atgtttcttgggatatttatgcatctataatatcatgttataaataacacttaaaaaaacttgttagaaaacgagcacacat--gatttaatttgatctc 19412260  T
Q  299 tttatttcaataaagtttgttatcattaaaagatcaatttaaga 342  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||    
T  19412261 tttatttcaatgaagtttgttatccttaaaacatcaatttaaga 19412304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 621
Target Start/End: Complemental strand, 13584003 - 13583922
Alignment:
Q  540 tgtatgttttaaacatagcatgatcataacaaacatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaac 621  Q
    ||||||| || ||||||||| | ||||||||||||||| | ||||| |||||||| |||||| | | ||  |||||||||||    
T  13584003 tgtatgtcttgaacatagcacggtcataacaaacatggcgagaggcgccagtgtctatccaccatccatcagatccaccaac 13583922  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 25228957 - 25228840
Alignment:
Q  21 tgttcctaagattgacatggatcagcttctgatctcatatttccttaatgagtcttgttcttcaatattgtagtgcatatgatatgcttctgatctcatt 120  Q
    ||||| |||||||| ||||||| | ||| |||||||| ||||||||| | | | || ||||||||| || | ||||  |||| |||||| ||||||||||    
T  25228957 tgttcataagattgtcatggataaacttatgatctcacatttccttagtcaatatttttcttcaattttctcgtgcccatgagatgcttttgatctcatt 25228858  T
Q  121 ctaaagcgcttctgatct 138  Q
    || ||| |||| ||||||    
T  25228857 ctcaagagcttatgatct 25228840  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 21414068 - 21414022
Alignment:
Q  221 catttgtaatatcattttctaaagagcacttaaagaaacttgttaga 267  Q
    ||||||||||||||| ||||||||| | || ||||||||||||||||    
T  21414068 catttgtaatatcatgttctaaagaacgctaaaagaaacttgttaga 21414022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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