View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_27 (Length: 433)
Name: NF19773_low_27
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 6436107 - 6436513
Alignment:
| Q |
16 |
atcaaactgcagaaccacaaaaatagaaaacagtaccacccataagcattaagaataactgatacacaaaaaacagaccaatcaaaaccagaaaactttc |
115 |
Q |
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| T |
6436107 |
atcaaactgcagaaccacaaaaatagaaaacagtaccacccataagcattaagaataactgatacacaaaaaacagaccaatcaaaaccagaaaactttc |
6436206 |
T |
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| Q |
116 |
tccatctgcactgcagagcgatcactgaagcagcgaaagaacacacccaaaaacgaaggcagatactaaaagccaccacaaccagaaaaaatctaataaa |
215 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
6436207 |
tccatctgcactgcagagcgatcactaaagcagcgaaagaacacacccaaaaacgaaggcagatactaaaagccgccataaccagaaaaaatctaataaa |
6436306 |
T |
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| Q |
216 |
aagaagaattatctgtcaatttcctctgaattctcaaacatcaattcaacacttgcataggcacaagataacactcatactcaatttaatcaacaatgag |
315 |
Q |
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| T |
6436307 |
aagaagaattatctgtcaatttcctctgaattctcaaacatcaattcaacacttgcataggcacaagataacactcatactcaatttaatcaacaatgag |
6436406 |
T |
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| Q |
316 |
aataggcactgcacgtggatgaaactctaagcagagcactattgatgacacaaacca--acacatcacaatttaattgataaaattagcttcacacaccc |
413 |
Q |
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| T |
6436407 |
aataggcactgcacgtgggtg-cactctaagcagagcactattgatgacacaaaccaacacacatcacaatttaattgataaaattagcttcacacaccc |
6436505 |
T |
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| Q |
414 |
aacttaat |
421 |
Q |
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|||||||| |
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| T |
6436506 |
aacttaat |
6436513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 6422414 - 6422462
Alignment:
| Q |
121 |
ctgcactgcagagcgatcactgaagcagcgaaagaacacacccaaaaac |
169 |
Q |
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|||||||||| || |||||| |||||| ||||||||| ||||||||||| |
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| T |
6422414 |
ctgcactgcaaagtgatcaccgaagcaccgaaagaactcacccaaaaac |
6422462 |
T |
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