View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_28 (Length: 429)
Name: NF19773_low_28
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_28 |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 8e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 101 - 307
Target Start/End: Original strand, 31032675 - 31032883
Alignment:
| Q |
101 |
gcttaaaataatttaccaaattaagct--catgtcacgaagcaatttgaccagtaaacatgaatcttgaactatgccaacatgaattccgaattgataat |
198 |
Q |
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| T |
31032675 |
gcttgaaataatttaccaaattaagctttcatgtcgtcaagcaatttggccaataaacatgaatcttgaactatgccaacatgaattccgaattggaaat |
31032774 |
T |
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| Q |
199 |
tgaaactcaaaaattcaattcaagcaaagaatctaatggtcaaaccatgagcaattgacaattaactcaagttaaatatttcagta-ctctttaatttct |
297 |
Q |
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| T |
31032775 |
tgatactcaaaa-ttcaattcaagcaaagaatgtaatggtcgaaccatgagcaattgacaattaactcaagttaaatattttagtacctctttaatttct |
31032873 |
T |
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| Q |
298 |
taacagttga |
307 |
Q |
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| T |
31032874 |
tgacagttga |
31032883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 31022783 - 31022971
Alignment:
| Q |
101 |
gcttaaaataatttaccaaattaagctc--atgtcacgaagcaatttgaccagtaaacatgaatcttgaactatgccaacatgaattccgaattgataat |
198 |
Q |
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| T |
31022783 |
gcttgaaacaatttaccaaattaagctctcatgtcatcatgcaatttgaccaataaacatgaatcttgaaccatgccaacatgaataccaaattggaaat |
31022882 |
T |
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| Q |
199 |
tgaaactcaaaa--attcaattcaagcaaagaatctaatggtcaaaccatgagcaattgacaattaactcaagttaaatatttcagtac |
285 |
Q |
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| T |
31022883 |
tgatactaaaaaaaattcaattcaagcaaagaatctaatggtcaaaccatgagcaattgacaattaactcaagttaaatatttcagtac |
31022971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 31102806 - 31102891
Alignment:
| Q |
154 |
aacatgaatcttgaac----tatgccaacatgaattccgaattgataattgaaact-caaaaattcaattcaagcaaagaatctaa |
234 |
Q |
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| T |
31102806 |
aacatgaatcttgaactatatatgccaacatgaaatccaaatttatagttgatactcctaaaattcaatacaagcaaacaatctaa |
31102891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 3386 - 3298
Alignment:
| Q |
157 |
atgaatcttgaactatgccaacatgaattccgaattgataattgaaactcaaaaa-ttcaattcaagcaaagaatctaatggtcaaacc |
244 |
Q |
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| T |
3386 |
atgaatcttgaaatatgccaacatgaatttcgaattagaaattgatactaaaaaaattcaattcaagcaaagaatctaatggtcaaacc |
3298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 285
Target Start/End: Complemental strand, 18430318 - 18430148
Alignment:
| Q |
126 |
ctcatgtcacgaagcaatttgaccagtaaacatgaatcttgaactatgccaacatgaattccgaattgataattgaaact--------caaaaattcaat |
217 |
Q |
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| T |
18430318 |
ctcatgtcatcaagcaattttaccaataagcatgaatcttgaaatatgccaacttgaaatccaaattgatagttgatagttgatactcccaaaatttaat |
18430219 |
T |
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| Q |
218 |
tcaagcaaagaatctaa-tggtcaaaccat--gagcaattgacaattaactcaagttaaatatttcagtac |
285 |
Q |
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| T |
18430218 |
tcaaacaatgaatctaattggccaaaccatgagagtaattgacaattaactcaagccaaatgtttcagtac |
18430148 |
T |
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