View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_29 (Length: 426)

Name: NF19773_low_29
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_29
NF19773_low_29
[»] chr3 (10 HSPs)
chr3 (16-203)||(43368049-43368237)
chr3 (266-322)||(43367932-43367988)
chr3 (47-138)||(65965-66056)
chr3 (44-129)||(2594488-2594573)
chr3 (19-107)||(50585724-50585812)
chr3 (377-420)||(43367829-43367872)
chr3 (44-131)||(21594467-21594555)
chr3 (31-88)||(12101643-12101700)
chr3 (31-88)||(47670668-47670725)
chr3 (44-145)||(47409608-47409711)
[»] chr5 (6 HSPs)
chr5 (20-106)||(18282264-18282350)
chr5 (49-143)||(40715786-40715881)
chr5 (19-107)||(29686221-29686309)
chr5 (44-135)||(14001087-14001180)
chr5 (31-88)||(19361482-19361539)
chr5 (31-88)||(43396349-43396406)
[»] scaffold0047 (1 HSPs)
scaffold0047 (43-145)||(65531-65633)
[»] chr4 (3 HSPs)
chr4 (28-154)||(33389848-33389979)
chr4 (31-80)||(44855970-44856019)
chr4 (43-138)||(10214292-10214385)
[»] chr2 (4 HSPs)
chr2 (19-110)||(8904949-8905040)
chr2 (62-151)||(11681590-11681681)
chr2 (44-151)||(11694165-11694273)
chr2 (117-145)||(10314769-10314797)
[»] chr8 (5 HSPs)
chr8 (19-107)||(11420416-11420504)
chr8 (10-56)||(11439112-11439158)
chr8 (19-108)||(1284140-1284229)
chr8 (43-80)||(3541189-3541226)
chr8 (31-88)||(42844111-42844168)
[»] chr7 (2 HSPs)
chr7 (64-143)||(28069630-28069710)
chr7 (31-88)||(44652062-44652119)
[»] chr6 (4 HSPs)
chr6 (373-417)||(28493869-28493913)
chr6 (373-417)||(29806278-29806322)
chr6 (44-145)||(32279571-32279674)
chr6 (31-88)||(17505319-17505376)
[»] chr1 (5 HSPs)
chr1 (28-80)||(10428066-10428118)
chr1 (62-145)||(33218424-33218508)
chr1 (31-88)||(34078115-34078172)
chr1 (31-80)||(39729390-39729439)
chr1 (31-103)||(21966234-21966306)
[»] scaffold0024 (1 HSPs)
scaffold0024 (31-88)||(110709-110766)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 43368237 - 43368049
Alignment:
Q  16 ctcattatacttttaaacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaattt-gtatcatgtttgttatatttttctaa 114  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||    
T  43368237 ctcattatacttttaaacaaattttattataaaaatattattgtgctggtgtcattcaaaaagattaaaattttgtatcatatttattatatttttctaa 43368138  T
Q  115 tgatattatatttattatattgttagtatcagtaaaatagctatgttatacgttttgaaaacaatataacatagctattgataaaattg 203  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43368137 agatattatatttattatattgttagtatcattaaaatagctatgttatacgttttgaaaacaatataacatagctattgataaaattg 43368049  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 43367988 - 43367932
Alignment:
Q  266 gaacactcatcttattcttagatcattttctatgaaggagtatatttattaatgata 322  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43367988 gaacactcgtcttattcttagatcattttctatgaaggagtatatttattaatgata 43367932  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 65965 - 66056
Alignment:
Q  47 agaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatatttttctaatgatattatatttattatattgtt 138  Q
    ||||||||||| || ||||||||||||||||||| ||||||  |||  | ||||||||||||||  || |||||||||||||||||||||||    
T  65965 agaatattattttgttggtgtcattcaaaaagataaaaattcatattttatttgttatattttttaaaagatattatatttattatattgtt 66056  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 2594488 - 2594573
Alignment:
Q  44 ataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatatttttctaatgatattatatttat 129  Q
    |||| ||| ||||| |||||||||||||||||||||| | ||||| ||| || |||||||||||||| |||  |||||||||||||    
T  2594488 ataacaatgttattttgctggtgtcattcaaaaagataagaatttatattatatttgttatatttttttaaaaatattatatttat 2594573  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 50585724 - 50585812
Alignment:
Q  19 attatacttttaaacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatatt 107  Q
    |||||||||||||  ||||||    |||||||||||||| || |||||| |||||||||||| ||||||| ||| || |||||||||||    
T  50585724 attatacttttaactaaatttgacaataagaatattattttgttggtgttattcaaaaagataaaaatttatattatatttgttatatt 50585812  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 420
Target Start/End: Complemental strand, 43367872 - 43367829
Alignment:
Q  377 aagaagaaacgaggctagcgcctcagaaaaacaactcctagttc 420  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||    
T  43367872 aagaataaacgaggctagcgcctcataaaaacaactcctagttc 43367829  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 21594555 - 21594467
Alignment:
Q  44 ataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatatttttct-aatgatattatatttatta 131  Q
    |||| ||||||||| || |||||||| |||||||||| | ||||| ||| || |||||||||||||| | || ||||||||||| ||||    
T  21594555 ataaaaatattattttgttggtgtcactcaaaaagatgagaatttatattatatttgttatatttttttgaaagatattatattaatta 21594467  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 12101643 - 12101700
Alignment:
Q  31 aacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaattt 88  Q
    ||||||||||||||||||||||| ||  |  |||||||||| |||||||| |||||||    
T  12101643 aacaaattttgttataagaatatcatatttttggtgtcatttaaaaagataaaaattt 12101700  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 47670668 - 47670725
Alignment:
Q  31 aacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaattt 88  Q
    ||||||||||||||||||||||| ||  |  |||||||||| |||||||| |||||||    
T  47670668 aacaaattttgttataagaatatcatatttttggtgtcatttaaaaagataaaaattt 47670725  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 47409608 - 47409711
Alignment:
Q  44 ataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatatttttct--aatgatattatatttattatattgttagt 141  Q
    |||||||| ||||| ||  |||||||| ||||||||| | ||||| ||| ||  ||||||||||||| |  || |||| |||||||||||||| ||| ||    
T  47409608 ataagaatgttattttgtcggtgtcatccaaaaagataagaatttatattatacttgttatatttttttgaaaagatactatatttattatatagttggt 47409707  T
Q  142 atca 145  Q
    ||||    
T  47409708 atca 47409711  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 18282350 - 18282264
Alignment:
Q  20 ttatacttttaaacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatat 106  Q
    |||||| |||||||||||||   ||||||||||||||| || ||||||||||||||||||| |||||||||||  | ||||||||||    
T  18282350 ttatacctttaaacaaatttgactataagaatattattttgttggtgtcattcaaaaagataaaaatttgtattctatttgttatat 18282264  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 40715786 - 40715881
Alignment:
Q  49 aatattattgtgctggtgtcatt-caaaaagattaaaatttgtatcatgtttgttatatttttctaatgatattatatttattatattgttagtat 143  Q
    |||| |||| || |||||||||| ||||||||| | ||||| |||||| |||||||||||||| ||| |||||||||||| |||||||||| ||||    
T  40715786 aatactattttgttggtgtcatttcaaaaagataagaatttatatcatatttgttatatttttttaaggatattatatttgttatattgttggtat 40715881  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 29686309 - 29686221
Alignment:
Q  19 attatacttttaaacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatatt 107  Q
    |||||||| |||||||||||||  ||||||||| ||| | |  ||||||||||||||||||| | ||||| ||| || |||||||||||    
T  29686309 attatactcttaaacaaattttactataagaatgttaatttattggtgtcattcaaaaagataagaatttatattatatttgttatatt 29686221  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 14001180 - 14001087
Alignment:
Q  44 ataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatatttttct---aatgatattatatttattatatt 135  Q
    |||||||| ||||| || || |||||||||||||||| | ||||| ||| || |||||||||||||| |   ||| |||||||||||||||||||    
T  14001180 ataagaatgttattttgttgatgtcattcaaaaagataagaatttatattatatttgttatattttttttggaat-atattatatttattatatt 14001087  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 19361539 - 19361482
Alignment:
Q  31 aacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaattt 88  Q
    ||||||||||||||||||||||| ||  |  |||||||||| |||||||| |||||||    
T  19361539 aacaaattttgttataagaatatcatatttttggtgtcatttaaaaagataaaaattt 19361482  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 43396406 - 43396349
Alignment:
Q  31 aacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaattt 88  Q
    ||||||||||||||||||||||| ||  |  |||||||||| |||||||| |||||||    
T  43396406 aacaaattttgttataagaatatcatatttttggtgtcatttaaaaagataaaaattt 43396349  T

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Target: scaffold0047 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 65531 - 65633
Alignment:
Q  43 tataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatatttttctaatgatattatatttattatattgttagta 142  Q
    ||||| ||||||||| || |||| |||||||||||||| | ||||| ||| || ||||||||||||||  || | |||||||||| |||||||||| |||    
T  65531 tataaaaatattattttgttggtatcattcaaaaagataagaatttatattatatttgttatattttttaaaaggtattatatttgttatattgttggta 65630  T
Q  143 tca 145  Q
    |||    
T  65631 tca 65633  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 33389979 - 33389848
Alignment:
Q  28 ttaaacaaattttgttataagaatattattgtgctggtgtcatt----caaaaagattaaaatttgtatcatgtttgttatatttttctaatgatattat 123  Q
    ||||||||||||  |||||| ||||||||| || |||||| |||    ||||||||| | ||||| ||| || |||||||||||||| ||||||||||||    
T  33389979 ttaaacaaatttgattataaaaatattattttgttggtgttattaattcaaaaagataagaatttatattatatttgttatatttttgtaatgatattat 33389880  T
Q  124 a-tttattatattgttagtatcagtaaaatag 154  Q
    | ||| |||||||||| |||| | ||||||||    
T  33389879 attttgttatattgttcgtataaataaaatag 33389848  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 44855970 - 44856019
Alignment:
Q  31 aacaaattttgttataagaatattattgtgctggtgtcattcaaaaagat 80  Q
    ||||||||||||||||||||||| ||| |  |||||||||||||||||||    
T  44855970 aacaaattttgttataagaatatcatttttttggtgtcattcaaaaagat 44856019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 10214385 - 10214292
Alignment:
Q  43 tataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatatttttctaatgatattatatttattatattgtt 138  Q
    ||||||||| ||||| || |||||||||||||| | || | ||||||||| || |||||  | ||||| ||| ||| |||||||| ||||||||||    
T  10214385 tataagaatgttattttgttggtgtcattcaaatatataagaatttgtattatatttgt--tttttttttaaagatgttatatttgttatattgtt 10214292  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 8905040 - 8904949
Alignment:
Q  19 attatacttttaaacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatattttt 110  Q
    |||||||||| || |||||||   |||||||||  |||| |||||||||||||||| ||||| | ||||| |||||| ||||||||||||||    
T  8905040 attatactttaaatcaaatttgactataagaatgctattttgctggtgtcattcaacaagataagaatttatatcatatttgttatattttt 8904949  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 11681681 - 11681590
Alignment:
Q  62 tggtgtcattcaaaaagattaaaatttgtatcatgtttgttatatttttct--aatgatattatatttattatattgttagtatcagtaaaa 151  Q
    |||||||||||||||| || ||||||| ||| || |||||||||||||| |  ||  ||||||||||| |||||||||| |||||| |||||    
T  11681681 tggtgtcattcaaaaatataaaaatttatattatatttgttatattttttttgaaaaatattatatttgttatattgtttgtatcattaaaa 11681590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 11694273 - 11694165
Alignment:
Q  44 ataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatatttttctaatga-tattatatttattatattgttagta 142  Q
    ||||||||  |||| || |||||||||||||||| || ||||||| ||| || ||||||||||||||  ||  | |||||||||| |||||||||| |||    
T  11694273 ataagaatgctattttgttggtgtcattcaaaaatataaaaatttatattatatttgttatattttttaaaaaaatattatatttgttatattgttggta 11694174  T
Q  143 tcagtaaaa 151  Q
    ||| |||||    
T  11694173 tcattaaaa 11694165  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 10314769 - 10314797
Alignment:
Q  117 atattatatttattatattgttagtatca 145  Q
    |||||||||||||||||||||||||||||    
T  10314769 atattatatttattatattgttagtatca 10314797  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 11420504 - 11420416
Alignment:
Q  19 attatacttttaaacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatatt 107  Q
    ||||||| |||||| ||||||   ||||||||||||||| || ||||||  ||||||||||| | ||||| ||| || |||||||||||    
T  11420504 attatacatttaaataaatttgactataagaatattattttgttggtgttgttcaaaaagataagaatttatattatatttgttatatt 11420416  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 11439158 - 11439112
Alignment:
Q  10 attatactcattatacttttaaacaaattttgttataagaatattat 56  Q
    ||||| || |||||||||||||||||||||| |||||| ||||||||    
T  11439158 attattctaattatacttttaaacaaattttcttataataatattat 11439112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 1284140 - 1284229
Alignment:
Q  19 attatacttttaaacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatattt 108  Q
    |||||||| | ||||||||||   ||||||||| ||||| || | |||||||||||||||||  |||||| | | || ||||||||||||    
T  1284140 attatactctgaaacaaatttcactataagaatgttattttgttagtgtcattcaaaaagatacaaatttatgttatatttgttatattt 1284229  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 3541189 - 3541226
Alignment:
Q  43 tataagaatattattgtgctggtgtcattcaaaaagat 80  Q
    ||||||||||||||| || |||||||||||||||||||    
T  3541189 tataagaatattattttgttggtgtcattcaaaaagat 3541226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 42844168 - 42844111
Alignment:
Q  31 aacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaattt 88  Q
    ||||||||||||||||||||||| ||  |  |||||||||| |||||||| |||||||    
T  42844168 aacaaattttgttataagaatatcatatttttggtgtcatttaaaaagataaaaattt 42844111  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 28069710 - 28069630
Alignment:
Q  64 gtgtcattcaaaaagattaaaatttgtatcatgtttgttat-atttttctaatgatattatatttattatattgttagtat 143  Q
    ||||||||||||||||| | ||||| ||| || ||||||||  ||||| ||| |||||||||||| |||||||||| ||||    
T  28069710 gtgtcattcaaaaagataagaatttatattatatttgttatcttttttttaaagatattatatttgttatattgttggtat 28069630  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 44652062 - 44652119
Alignment:
Q  31 aacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaattt 88  Q
    ||||||||||||||||||||||| ||  |  |||||||||| |||||||| |||||||    
T  44652062 aacaaattttgttataagaatatcatatttttggtgtcatttaaaaagataaaaattt 44652119  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 28493913 - 28493869
Alignment:
Q  373 agacaagaagaaacgaggctagcgcctcagaaaaacaactcctag 417  Q
    |||||||||||||| |||||||||||| || ||||||||||||||    
T  28493913 agacaagaagaaacaaggctagcgccttaggaaaacaactcctag 28493869  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 29806322 - 29806278
Alignment:
Q  373 agacaagaagaaacgaggctagcgcctcagaaaaacaactcctag 417  Q
    |||||||||||||| |||||||||||| || ||||||||||||||    
T  29806322 agacaagaagaaacaaggctagcgccttaggaaaacaactcctag 29806278  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 32279674 - 32279571
Alignment:
Q  44 ataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgttatatttttct--aatgatattatatttattatattgttagt 141  Q
    |||| ||| ||||| || |||||||||| |||||||| | ||||| ||| || ||||||||||||||||  ||  ||||||||||| || |||||||| |    
T  32279674 ataaaaatgttattttgttggtgtcattaaaaaagataagaatttatattatatttgttatatttttctagaaaaatattatatttgttgtattgttaat 32279575  T
Q  142 atca 145  Q
    ||||    
T  32279574 atca 32279571  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 17505376 - 17505319
Alignment:
Q  31 aacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaattt 88  Q
    ||||||||||||||||||||||| ||  |  |||||||||| |||||||| |||||||    
T  17505376 aacaaattttgttataagaatatcatatttttggtgtcatttaaaaagataaaaattt 17505319  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 10428118 - 10428066
Alignment:
Q  28 ttaaacaaattttgttataagaatattattgtgctggtgtcattcaaaaagat 80  Q
    ||||||||||||   ||||||||||||||| || |||||||||||||||||||    
T  10428118 ttaaacaaatttgactataagaatattattttgttggtgtcattcaaaaagat 10428066  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 33218424 - 33218508
Alignment:
Q  62 tggtgtcattcaaaaagattaaaatttgtatcatgtttgttata-tttttctaatgatattatatttattatattgttagtatca 145  Q
    ||||||||||||||||||| | ||||| ||| |||||| ||| | ||||| ||| |||||||||||| || ||||||| ||||||    
T  33218424 tggtgtcattcaaaaagataagaatttatattatgtttattagattttttttaaagatattatatttgttgtattgttggtatca 33218508  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 34078172 - 34078115
Alignment:
Q  31 aacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaattt 88  Q
    ||||||||||||||||||||||| ||  |  |||||||||| |||||||| |||||||    
T  34078172 aacaaattttgttataagaatatcatatttttggtgtcatttaaaaagataaaaattt 34078115  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 39729390 - 39729439
Alignment:
Q  31 aacaaattttgttataagaatattattgtgctggtgtcattcaaaaagat 80  Q
    ||||||||||||||||||||||||||  |  |||||||||| ||||||||    
T  39729390 aacaaattttgttataagaatattatatttttggtgtcatttaaaaagat 39729439  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 21966234 - 21966306
Alignment:
Q  31 aacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaatttgtatcatgtttgtta 103  Q
    ||||||||| ||||||||||||| ||  |  ||||||||||||||||||| | ||||| ||| || |||||||    
T  21966234 aacaaatttcgttataagaatatcatatttttggtgtcattcaaaaagataagaatttatattatatttgtta 21966306  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 110709 - 110766
Alignment:
Q  31 aacaaattttgttataagaatattattgtgctggtgtcattcaaaaagattaaaattt 88  Q
    ||||||||||||||||||||||| ||  |  |||||||||| |||||||| |||||||    
T  110709 aacaaattttgttataagaatatcatatttttggtgtcatttaaaaagataaaaattt 110766  T

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