View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_3 (Length: 704)

Name: NF19773_low_3
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_3
NF19773_low_3
[»] chr5 (1 HSPs)
chr5 (18-694)||(5674636-5675310)


Alignment Details
Target: chr5 (Bit Score: 650; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 18 - 694
Target Start/End: Complemental strand, 5675310 - 5674636
Alignment:
Q  18 aaatgaagacctcaaattagaggtagtgaagttgaaaatgaaactaaaagagatcgagatttccacgcttaaatcaactgttaaatcaacagtaaaatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5675310 aaatgaagacctcaaattagaggtagtgaagttgaaaatgaaactaaaagagatcgagatttccacgcttaaatcaactgttaaatcaacagtaaaatca 5675211  T
Q  118 acggttaacagtcctattgcaaatgcttcaccttctcattctcattctgctgataagcctccactacctcgtaaatcgtttataagttcggtttcaaaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5675210 acggttaacagtcctattgcaaatgcttcaccttctcattctcattctgctgataagcctccactacctcgtaaatcgtttataagttcggtttcaaaga 5675111  T
Q  218 aacttgggaagctttctccttttccacgtttggagggtattgtatctgctaaaggtaaaacaaaaccaaacaagaatcgacgacactctatttcctgagg 317  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5675110 aacttgggaagctttctccttttccacgtttggatggtattgtatctgctaaaggtaaaataaaaccaaacaagaatcgacgacactctatttcctgagg 5675011  T
Q  318 tcatgaaaataaatacaggagtactatgttttctagttttgtttttgcttcatttgtgtgattctgtgtaaattatgtcatcacgatgttaaagtgggaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5675010 tcatgaaaataaatacaggagtactatgttttctagttttgtttttgcttcatttgtgtgattctgtgtaaattatgtcatcacgatgttaaagtgggaa 5674911  T
Q  418 ccatattgtaaagggtggtggtgaaaaataaaatataattcttgagttggattgcattgcaaccttgttggtgtactactctcatatattgtgataagta 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5674910 ccatattgtaaagggtggtggtgaaaaataaaatataattcttgagttggattgcattgcaaccttgttggtgtactactctcatatattgtgataagta 5674811  T
Q  518 caagtggtaattacacccacaaagaaaaaatagatgaacatgattttctcctatctaagcatactctcaataaggtgaataaatttgtcgaaaaaaccat 617  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5674810 caagtggtaattacacccac--agaaaaaatagatgaacatgattttctcctatctaagcatactctcaataaggtgaataaatttgtcgaaaaaaccat 5674713  T
Q  618 tgacgcaccaatccattttaagattttgtaccaaatttgacttgcaaatctacacaaagtgaatgcatgtgtctctg 694  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5674712 cgacgcaccaatccattttaagattttgtaccaaatttgacttgcaaatctacacaaaatgaatgcatgtgtctctg 5674636  T

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