View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_31 (Length: 418)
Name: NF19773_low_31
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 2925189 - 2925579
Alignment:
| Q |
18 |
atcttaaatgttgaaaagtattaacaggctttttggcataaagttgaacctggaattaaagtgtttcctttttaacttgatgatttcgcaaatgtggaat |
117 |
Q |
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| T |
2925189 |
atcttaaatgttgaaaagtataaacaggctttttggcataaagttgaacctggaattaaagtgtttcctttttaacttgatgatttcgcaaatgtggaat |
2925288 |
T |
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| Q |
118 |
tgtcttgcaatgaatatttgtcaccaaatgtaagcttctaaataatgatattaaatgcgtgcaatacttccaaactgcttttggcttcttatgcatcatc |
217 |
Q |
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| T |
2925289 |
tgtcttgcaatgaatatttgtcaccaaatgtaagcttctaaataatgatattaaatgcgtgcaatgcttccaaactgcttttggcttcttatgcatcatg |
2925388 |
T |
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| Q |
218 |
agagtagagagtaacacaacataagcttccaatgcnnnnnnnnncaaaaggggattttgtcaatatataagatttgaaatcagagaatcttaggaagcag |
317 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2925389 |
agagtagagagtaacataacataagcttccaatgcaaaaaaaaacaaaaggggattttgtcaatatataagatttgaaatcagagaatcttaggaagcag |
2925488 |
T |
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| Q |
318 |
catgaatccgaccttacaaaaaaggttatgttaccatgttttaatttaatcctataccatcttcgcatctttgtttatattttaccctatg |
408 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2925489 |
catgaatccgactttacaaaaaaggttatgttaccatgttttaatttaatcctataccatcttcgcatctttgtttatattttaccctatg |
2925579 |
T |
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