View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_35 (Length: 410)

Name: NF19773_low_35
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_35
NF19773_low_35
[»] chr3 (21 HSPs)
chr3 (30-394)||(22457829-22458193)
chr3 (30-394)||(22480810-22481174)
chr3 (30-394)||(22467291-22467655)
chr3 (30-394)||(22435971-22436335)
chr3 (30-394)||(22629786-22630145)
chr3 (130-394)||(22634946-22635210)
chr3 (76-394)||(22357388-22357706)
chr3 (30-293)||(22353155-22353415)
chr3 (76-349)||(22442128-22442401)
chr3 (30-390)||(22367264-22367624)
chr3 (76-394)||(22430556-22430874)
chr3 (75-394)||(22620269-22620588)
chr3 (79-347)||(22656443-22656711)
chr3 (129-297)||(37930298-37930467)
chr3 (136-349)||(30988739-30988952)
chr3 (106-294)||(22647588-22647776)
chr3 (184-347)||(21946445-21946608)
chr3 (79-338)||(22180247-22180506)
chr3 (184-294)||(21931295-21931405)
chr3 (139-273)||(22614708-22614842)
chr3 (263-349)||(22628096-22628182)
[»] chr1 (4 HSPs)
chr1 (75-339)||(34990046-34990310)
chr1 (75-294)||(34976245-34976464)
chr1 (75-294)||(34983356-34983575)
chr1 (185-347)||(2304969-2305131)
[»] chr7 (2 HSPs)
chr7 (128-202)||(872150-872224)
chr7 (128-202)||(1233427-1233501)
[»] chr5 (1 HSPs)
chr5 (136-336)||(40580766-40580966)


Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 394
Target Start/End: Original strand, 22457829 - 22458193
Alignment:
Q  30 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 129  Q
    |||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22457829 gaacctgtgagttttcaatattttccatcaaattgtcaaatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 22457928  T
Q  130 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  22457929 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatgcaccagatcatgaacacaacaactttttgctcttccatcaatactaatt 22458028  T
Q  230 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  22458029 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttaccatatcatctttcacaaatccttcag 22458128  T
Q  330 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 394  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22458129 ccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatccaaaatac 22458193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 394
Target Start/End: Original strand, 22480810 - 22481174
Alignment:
Q  30 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 129  Q
    |||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22480810 gaacctgtgagttttcaatattttccatcaaattgtcaaatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 22480909  T
Q  130 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  22480910 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatgcaccagatcatgaacacaacaactttttgctcttccatcaatactaatt 22481009  T
Q  230 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  22481010 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttaccatatcatctttcacaaatccttcag 22481109  T
Q  330 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 394  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22481110 ccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatccaaaatac 22481174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 30 - 394
Target Start/End: Original strand, 22467291 - 22467655
Alignment:
Q  30 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 129  Q
    |||| |||||||||||||||  || ||| |||||||||||  |  || |||||||||||||||||| ||| ||| |||||||  |||| |  |||||  |    
T  22467291 gaacatgtgagttttcaataactttcattaaattatcagaggtagtttctattgataggcgtcgaatcattccagttaaagacaattgtttgtcctcagt 22467390  T
Q  130 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 229  Q
    ||||||||||||||||||||| || ||| |||| |||||||||| |||||| |||||||||||||||| |||||||||| |||||||||||||||| |||    
T  22467391 aatattcttgcaaaaacttaaatcctcatatttatcaaggatcattgcatgcactagatcatgaacacgacaactttttactcttccatcaatacttatt 22467490  T
Q  230 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 329  Q
    ||||||||||||||||||| ||||  |||||| ||| |||||||||| || ||||| |||||||||||  |  | || || || ||||| || |||||||    
T  22467491 gaaactacttgcaccaaacttctatggatcaactctattaaatatccttcagcaacctcttccaatgtcctccccctgtcttccttcacaaacccttcag 22467590  T
Q  330 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 394  Q
    | |||||||| ||| ||||  | |||| | |||||||| |  |||||||||||||||||||||||    
T  22467591 caatccattggcgagtcaacgtctttgaatgaactatatagtcttcaggatataatccaaaatac 22467655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 30 - 394
Target Start/End: Original strand, 22435971 - 22436335
Alignment:
Q  30 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 129  Q
    |||| |||||| ||||||||  |||||| | ||||| ||| ||| |||| |||||||||||||||  ||  | | |||||||  |||| |  |||||  |    
T  22435971 gaacatgtgagctttcaataccttccattagattataagaactggttgccattgataggcgtcgagtcactctagttaaagaaaattgattgtcctcagt 22436070  T
Q  130 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 229  Q
    ||||||||||||||||||||| || ||| |||| |||||||||| |||||| |||| ||||||||||| |||||||||| |||||||||||||||| |||    
T  22436071 aatattcttgcaaaaacttaaatcctcatatttctcaaggatcattgcatgcactaaatcatgaacacgacaactttttactcttccatcaatacttatt 22436170  T
Q  230 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 329  Q
    |||||||| |||||||||| |||| ||| ||| ||| |||||||||| | ||||| ||||||||||||  || | || || ||||||||||| |||||||    
T  22436171 gaaactacatgcaccaaacttctattgaccaactctattaaatatccttttgcaatatcttccaatgtccttcccctctcttctttcacgaacccttcag 22436270  T
Q  330 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 394  Q
    | |||||||| ||| ||||| | |||| | |||||||| |  |||||||||||||||||||||||    
T  22436271 caatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatccaaaatac 22436335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 30 - 394
Target Start/End: Original strand, 22629786 - 22630145
Alignment:
Q  30 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 129  Q
    |||| ||||||||||||||| ||| ||| ||||||||||   |  |||||||||||||||||| || ||| ||| |||||||  |||| |  |||||  |    
T  22629786 gaacatgtgagttttcaatacttttcattaaattatcag---tagttgctattgataggcgtcaaatcattccagttaaagacaattgcttgtcctcaat 22629882  T
Q  130 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 229  Q
    ||||||||||||||||||||| || ||| |||| |||||||||| |||||| ||||||||||| |||| |||||||||| |||||||||  |||||  ||    
T  22629883 aatattcttgcaaaaacttaaatcctcatatttctcaaggatcattgcatgcactagatcatgtacacgacaactttttactcttccat--atacttgtt 22629980  T
Q  230 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 329  Q
    ||||||||||||||||||| ||||| || ||| ||| |||||||||| ||| |||| |||||||||||| || |  |  | |||||||| || |||||||    
T  22629981 gaaactacttgcaccaaacttctacggaccaactctattaaatatccttctccaacctcttccaatgttcttcccttgacttctttcacaaacccttcag 22630080  T
Q  330 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 394  Q
    | |||||||| ||| |||| |  |||| | |||||||| |  |||||||||| ||||||||||||    
T  22630081 cgatccattggcgagtcaacacctttgaacgaactatatagtcttcaggatagaatccaaaatac 22630145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 130 - 394
Target Start/End: Original strand, 22634946 - 22635210
Alignment:
Q  130 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 229  Q
    ||||||||||||||||||||| || | | |||| |||||||||| | |||| |||||||||||||| |  ||||||||| ||||||||||||||||| ||    
T  22634946 aatattcttgcaaaaacttaaatccttaaatttgtcaaggatcatttcatgcactagatcatgaacgcggcaactttttactcttccatcaatactagtt 22635045  T
Q  230 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 329  Q
    ||||||||||||||||||| ||||  |||||| |||  ||||||||| |||||||| ||||| |||||  || | || || ||||||||||| |||||||    
T  22635046 gaaactacttgcaccaaacttctatggatcaactctactaaatatccttctgcaacctcttcaaatgtccttcccctgtcttctttcacgaacccttcag 22635145  T
Q  330 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 394  Q
    | |||||||| ||| ||||| | |||| | |||||||| |  |||||||||||||||||||||||    
T  22635146 caatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatccaaaatac 22635210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 76 - 394
Target Start/End: Original strand, 22357388 - 22357706
Alignment:
Q  76 tgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaat 175  Q
    |||||||||||||||||||| ||| ||| |||||||  |||| |   ||||  ||||||||| |||||| ||||| |  | |  |||||||||||||| |    
T  22357388 tgctattgataggcgtcgaatcattccagttaaagacaattgtttgccctcagtaatattctcgcaaaagcttaaatgcttatgtttttcaaggatcatt 22357487  T
Q  176 gcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatc 275  Q
     |||| |||||||||||||||| ||||| |||| |||||||||||||||| |||||| ||||||||||||||| ||||   || || ||| |||||||||    
T  22357488 tcatgcactagatcatgaacacgacaacgttttactcttccatcaatactgattgaatctacttgcaccaaacttctatgtattaactcttttaaatatc 22357587  T
Q  276 catctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttc 375  Q
    | |||||||| |||||||  ||| || | | ||  | |||||| || |||||||| |||||||| ||| ||||| | |||| | ||||| || |  ||||    
T  22357588 cttctgcaacctcttccatcgttctttccccatattgtttcacaaacccttcagcaatccattgtcgagtcaatgtctttgaatgaactttatagtcttc 22357687  T
Q  376 aggatataatccaaaatac 394  Q
    |||||||||||||||||||    
T  22357688 aggatataatccaaaatac 22357706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 293
Target Start/End: Original strand, 22353155 - 22353415
Alignment:
Q  30 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 129  Q
    |||| ||||||||||||||| ||| ||| || |||||||| ||  |||||||||||||||||| || ||| ||| |||| ||   ||| |  | |||| |    
T  22353155 gaacatgtgagttttcaatacttttcattaacttatcagaactagttgctattgataggcgtcaaatcattccagttaatgacagttgtt--tgctcg-t 22353251  T
Q  130 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 229  Q
    ||||||||||||||||||||| || ||| |||||  |||||||| | |||| |||||||| ||||||| |||||||||| |||||||||||||||| | |    
T  22353252 aatattcttgcaaaaacttaaatcctcatattttctaaggatcatttcatgcactagatcgtgaacacgacaactttttactcttccatcaatactgact 22353351  T
Q  230 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttcca 293  Q
    ||| ||||||||||||||| ||||  ||| || ||| |||||||||| |||||||| |||||||    
T  22353352 gaatctacttgcaccaaacttctatggattaactcttttaaatatccttctgcaacctcttcca 22353415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 76 - 349
Target Start/End: Original strand, 22442128 - 22442401
Alignment:
Q  76 tgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaat 175  Q
    |||||||||||||||||||| ||| ||| |||||||  |||| |   ||||  ||||||||| |||||| ||||| |  | |  |||||||||||||| |    
T  22442128 tgctattgataggcgtcgaatcattccagttaaagacaattgttttccctcagtaatattctcgcaaaagcttaaatgcttatgtttttcaaggatcatt 22442227  T
Q  176 gcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatc 275  Q
     |||| ||||||||||||||||  ||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||| ||| ||  || |||||||||    
T  22442228 tcatgcactagatcatgaacacggcaactttttactcttccatcaatactggttgaaactacttgcaccaaacttctacagattaacacttttaaatatc 22442327  T
Q  276 catctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaat 349  Q
    | |||||||| | |||||||||  || | | ||  |||||||| || |||||||| |||||||| ||| |||||    
T  22442328 cttctgcaaccttttccaatgtcctttccccatattctttcacaaacccttcagctatccattgacgagtcaat 22442401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 30 - 390
Target Start/End: Original strand, 22367264 - 22367624
Alignment:
Q  30 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 129  Q
    |||| |||||| ||||||||  |||||| | ||||||||| ||   |||||||||||||||||||| ||| ||| || |||   ||||    |||||| |    
T  22367264 gaacatgtgagctttcaataccttccattagattatcagaacttgatgctattgataggcgtcgaatcattccagttgaaggcaattgtctgtcctcggt 22367363  T
Q  130 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 229  Q
    |||| |||||||||| ||||| || |||  ||| | |||||||| |||||| ||||||||||||||||  ||||| | | |||||||||||||| | ||     
T  22367364 aatactcttgcaaaagcttaaatcctcatgtttattaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgatc 22367463  T
Q  230 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 329  Q
      | ||||| ||||||||| ||||| |||||| ||| |||||| ||| |||||||| |||||||||||  || | || || |||||||| || |||||||    
T  22367464 ccatctactcgcaccaaacttctacggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttcttctttcacaaacccttcag 22367563  T
Q  330 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaa 390  Q
    | |||||||| ||| |||||||||||| | ||||  |  |  |||||||||||||||||||    
T  22367564 caatccattgacgagtcaatatatttgaacgaacatttgagtcttcaggatataatccaaa 22367624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 76 - 394
Target Start/End: Original strand, 22430556 - 22430874
Alignment:
Q  76 tgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaat 175  Q
    |||||||||||||||| ||| ||| ||| ||||| |  |||| |  | |||| | |||| ||| ||||| ||||| || ||| |||||| |||||||| |    
T  22430556 tgctattgataggcgttgaatcattccagttaaatacaattgattgttctcggtgatatacttacaaaagcttaaatcctcatattttttaaggatcatt 22430655  T
Q  176 gcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatc 275  Q
     |||| |||||||||||||||| ||||||| || |||||||||||||||| |||||| ||||||||||||||| ||||  |||||| ||| |||||||||    
T  22430656 tcatgcactagatcatgaacacgacaacttcttactcttccatcaatacttattgaatctacttgcaccaaacttctatggatcaactctattaaatatc 22430755  T
Q  276 catctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttc 375  Q
    | |||||||| |||| ||||||  || |  | |  |||||||| || |||||||| |||||||| | | | ||| | |||| |  ||||||| |  |||     
T  22430756 cttctgcaacctctttcaatgtccttcccgttttttctttcacaaacccttcagcaatccattgacaagttaatgtctttgaataaactatatagtcttt 22430855  T
Q  376 aggatataatccaaaatac 394  Q
    |||||||||||||||||||    
T  22430856 aggatataatccaaaatac 22430874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 75 - 394
Target Start/End: Original strand, 22620269 - 22620588
Alignment:
Q  75 ttgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaa 174  Q
    ||||||||||||||||||||   |   ||||||||||||| ||   ||| || ||||||| ||||||||||||||  || ||||| |||||||| ||||     
T  22620269 ttgctattgataggcgtcgagtaacttcacttaaagatgaatgacaatcttcactaatatacttgcaaaaacttagatcctcacacttttcaagtatcat 22620368  T
Q  175 tgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatat 274  Q
       | | | |||||||||||| ||||||||||||| | ||||||| || || | ||||  |||||||||||||| ||||  |||||| |||||||| |||    
T  22620369 catacgtattagatcatgaacgcaacaactttttgtttttccatcgattcttagtgaagatacttgcaccaaacttctatggatcaactctgttaagtat 22620468  T
Q  275 ccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaacctt 374  Q
    || |||||||| |||||||| || ||  | || || ||||| || || |||||||| |||||||||||||||||| | |||| |  |||| || || |||    
T  22620469 ccttctgcaacttcttccaaagtattccccctttcttcttttacaaacccttcagctatccattgccgaatcaatctctttgaatcaactttataatctt 22620568  T
Q  375 caggatataatccaaaatac 394  Q
    | ||||||||||||||||||    
T  22620569 ctggatataatccaaaatac 22620588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 79 - 347
Target Start/End: Original strand, 22656443 - 22656711
Alignment:
Q  79 tattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgca 178  Q
    |||||||||||||||||  || ||||||| |||||| ||| ||||  | ||||||| |||||| |||||||| || ||||| |||||||||||||    |    
T  22656443 tattgataggcgtcgaataattccacttatagatgaatggccatctgcactaatatgcttgcagaaacttaaatcctcacacttttcaaggatcatcata 22656542  T
Q  179 tggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccat 278  Q
    || | || |||||| |||||||||||||| | | |||| ||||| |||| |||   |||||| ||||||| ||  |  ||||| |||||||||||||| |    
T  22656543 tgtattaaatcatggacacaacaacttttagtttttccgtcaattctaactgaggatacttgtaccaaacatcggcgaatcaactctgttaaatatcctt 22656642  T
Q  279 ctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 347  Q
    ||||||| |||||||| |||||  | || || |||||||| || |||||||| ||||||||||| ||||    
T  22656643 ctgcaacttcttccaaagttttccccctttcttctttcacaaaaccttcagctatccattgccgtatca 22656711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 129 - 297
Target Start/End: Original strand, 37930298 - 37930467
Alignment:
Q  129 taatattcttgcaaaaacttaattcttcacatttttc-aaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaa 227  Q
    ||||||||| |||||||||||| ||   | |||| || |||||||| | |||| |||||||||||||||| |||||||||| |||||||||||||||       
T  37930298 taatattctcgcaaaaacttaaatccataaatttgtcaaaggatcatttcatgcactagatcatgaacacgacaactttttactcttccatcaataccgg 37930397  T
Q  228 ttgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgt 297  Q
    ||||||||||||||||||||| ||||| ||| || ||| |||||||||| || ||||| | |||||||||    
T  37930398 ttgaaactacttgcaccaaacttctacagattaactcttttaaatatccttccgcaaccttttccaatgt 37930467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 349
Target Start/End: Original strand, 30988739 - 30988952
Alignment:
Q  136 cttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaact 235  Q
    |||||||||| |||| || ||| |||||||||||||||   |  | | |||||||||||||| ||||| ||| ||| | |||||||  ||||  |||  |    
T  30988739 cttgcaaaaatttaaatcctcaaatttttcaaggatcatatcgcgtattagatcatgaacacgacaacctttagctttaccatcaactctaaccgaagat 30988838  T
Q  236 acttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatcc 335  Q
    ||||||||||| | ||||  |||||| |||||||||||||| |||||||| |||||||| || ||  | || || || |||||||| |||||||| | ||    
T  30988839 acttgcaccaagcttctatggatcaactctgttaaatatccttctgcaacgtcttccaaagtcttccctctttcctccttcacgaacccttcagctaccc 30988938  T
Q  336 attgccgaatcaat 349  Q
    |||| |||||||||    
T  30988939 attgtcgaatcaat 30988952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 106 - 294
Target Start/End: Original strand, 22647588 - 22647776
Alignment:
Q  106 taaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactt 205  Q
    |||||||||  | ||||| || ||||||| |||||| |||||||  || ||||  |||||||||||||    ||| |  |||||||||||||| ||||||    
T  22647588 taaagatgaaagatcatcttcactaatatgcttgcagaaacttatatcctcactcttttcaaggatcatcatatgtatcagatcatgaacacagcaactt 22647687  T
Q  206 tttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 294  Q
    || | | |||||||||| |||| ||||  |||||| ||||||| ||||  |||||| || ||||||||||  |||||||| ||||||||    
T  22647688 ttagtttttccatcaattctaactgaagatacttgaaccaaacttctatggatcaactcagttaaatatcgttctgcaacttcttccaa 22647776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 347
Target Start/End: Complemental strand, 21946608 - 21946445
Alignment:
Q  184 tagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgca 283  Q
    |||||||||||||| ||||| ||| ||| | |||||||| |||| ||||  |||||| ||||  | ||||  |||||| |||||||||||||| |||||     
T  21946608 tagatcatgaacacgacaacctttagctttaccatcaattctaagtgaagatacttgaaccaggcttctatggatcaactctgttaaatatccttctgcc 21946509  T
Q  284 acatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 347  Q
    || |||||||| || ||  | || || || ||||| || |||||||| |||||||| |||||||    
T  21946508 acttcttccaaagtcttccctctttcctccttcacaaacccttcagctatccattgtcgaatca 21946445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 338
Target Start/End: Complemental strand, 22180506 - 22180247
Alignment:
Q  79 tattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgca 178  Q
    |||||||||||| ||||| || |||||||| |||   ||  |||| || ||||||| |||||||||| | || || |||  ||||| ||||||||   ||    
T  22180506 tattgataggcgccgaactattccacttaaggatatctgtccatcatcactaatatgcttgcaaaaattaaaatcctcatttttttgaaggatcatatca 22180407  T
Q  179 tggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccat 278  Q
     | | |||||||||||||| ||||| ||| ||| | |||||||| ||||  |||  |||||| ||||  | ||||  |||||| ||||||| |||||| |    
T  22180406 cgtattagatcatgaacacgacaacctttagctttgccatcaattctaagcgaagatacttgaaccaggcttctatggatcaactctgttagatatccct 22180307  T
Q  279 ctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccatt 338  Q
    |||| || ||||||| ||||||| |  | || || ||||| || |||||||| |||||||    
T  22180306 ctgccacttcttccattgtttttcccttttcctccttcacaaacccttcagctatccatt 22180247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 294
Target Start/End: Complemental strand, 21931405 - 21931295
Alignment:
Q  184 tagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgca 283  Q
    |||||||||||||| ||||| ||| ||| | |||||||| |||| ||||  |||||| || |  | ||||  |||||| |||||||||||||| |||||     
T  21931405 tagatcatgaacacgacaacctttagctttgccatcaattctaagtgaagatacttgaacgaggcttctatggatcaactctgttaaatatccttctgcc 21931306  T
Q  284 acatcttccaa 294  Q
    || ||||||||    
T  21931305 acttcttccaa 21931295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 273
Target Start/End: Original strand, 22614708 - 22614842
Alignment:
Q  139 gcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactact 238  Q
    |||||||||||| || | | ||||||||| |||||   || | | |||||||||||||| |||||||||  || ||||||||||| |||| |||   | |    
T  22614708 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 22614807  T
Q  239 tgcaccaaacctctactgatcaaatctgttaaata 273  Q
    |||||||||| |||| | ||||| |||| ||||||    
T  22614808 tgcaccaaacttctattaatcaactctgataaata 22614842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 349
Target Start/End: Original strand, 22628096 - 22628182
Alignment:
Q  263 tctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaat 349  Q
    |||||||||||||| ||||  || ||||| || |||||| | || || |||||||| ||||||||||| ||| |||| |||||||||    
T  22628096 tctgttaaatatccttctgtgacttcttcgaaagtttttcccctttcttctttcacaaatccttcagctatcaattgtcgaatcaat 22628182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 339
Target Start/End: Complemental strand, 34990310 - 34990046
Alignment:
Q  75 ttgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaa 174  Q
    ||||||||||||||||||  |   | |||||||||||||| || || || ||  | | || ||||||||||||||| || ||||| |||||||||||||     
T  34990310 ttgctattgataggcgtctgatagttccacttaaagatgaatgatcgtcatcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatcat 34990211  T
Q  175 tgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatat 274  Q
       ||| |  ||||||||||||||||||||| | | | |||||||||| |||| |||   |||||||||||||| |||||  ||||| ||||||||||||    
T  34990210 catatgtatcagatcatgaacacaacaacttctagtttttccatcaatgctaactgaggatacttgcaccaaacttctacgaatcaactctgttaaatat 34990111  T
Q  275 ccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattg 339  Q
    |  ||| |||| |||||||| || ||  | || || |||||||| || |||||||| ||||||||    
T  34990110 ctttcttcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccattg 34990046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 294
Target Start/End: Complemental strand, 34976464 - 34976245
Alignment:
Q  75 ttgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaa 174  Q
    |||||||||||||||||| ||   | |||||||||||||| ||  |||| ||  | | || ||||||||||||||| || ||||| |||||||||||||     
T  34976464 ttgctattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatcat 34976365  T
Q  175 tgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatat 274  Q
       | | |  ||||||||||||||||||||||| |   |||||||||| |||| |||   |||||||||||||| || ||  ||||| ||||||||||||    
T  34976364 catacgtatcagatcatgaacacaacaacttttaggctttccatcaattctaactgaggatacttgcaccaaacttcgacgaatcaactctgttaaatat 34976265  T
Q  275 ccatctgcaacatcttccaa 294  Q
    || | |||||| ||||||||    
T  34976264 ccttttgcaacttcttccaa 34976245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 294
Target Start/End: Complemental strand, 34983575 - 34983356
Alignment:
Q  75 ttgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaa 174  Q
    |||||||||||||||||| ||   | |||||||||||||| ||  |||| ||  | | || ||||||||||||||| || ||||| |||||||||||||     
T  34983575 ttgctattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatcat 34983476  T
Q  175 tgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatat 274  Q
       | | |  ||||||||||||||||||||||| |   |||||||||| |||| |||   |||||||||||||| || ||  ||||| ||||||||||||    
T  34983475 catacgtatcagatcatgaacacaacaacttttaggctttccatcaattctaactgaggatacttgcaccaaacttcgacgaatcaactctgttaaatat 34983376  T
Q  275 ccatctgcaacatcttccaa 294  Q
    || | |||||| ||||||||    
T  34983375 ccttttgcaacttcttccaa 34983356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 347
Target Start/End: Original strand, 2304969 - 2305131
Alignment:
Q  185 agatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaa 284  Q
    ||||||||||||||||||||||| | | |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||| ||||||||| |||||||    
T  2304969 agatcatgaacacaacaacttttagattttccatcaatgctaactgaggatacttgcaccaaacttcgacgaatcaactctgataaatatccttctgcaa 2305068  T
Q  285 catcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 347  Q
    | |||||||| || ||  | || || || ||||| || |||||||| ||||| || |||||||    
T  2305069 cttcttccaaagtcttcccactttcctccttcacaaacccttcagctatccactgtcgaatca 2305131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 872150 - 872224
Alignment:
Q  128 ctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaa 202  Q
    ||||||| |||||||||| |||| || ||| ||||||||||||||||  |||| | |||||||||||||| ||||    
T  872150 ctaatatgcttgcaaaaatttaaatcctcaaatttttcaaggatcaaatcatgtagtagatcatgaacacgacaa 872224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 1233427 - 1233501
Alignment:
Q  128 ctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaa 202  Q
    ||||||| |||||||||| |||| || ||| ||||||||||||||||  |||| | |||||||||||||| ||||    
T  1233427 ctaatatgcttgcaaaaatttaaatcctcaaatttttcaaggatcaaatcatgtagtagatcatgaacacgacaa 1233501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 336
Target Start/End: Complemental strand, 40580966 - 40580766
Alignment:
Q  136 cttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaact 235  Q
    |||||||||||||||||| ||||| |||||| ||||||    | | |  | ||| |||||| |||||||||| | | |||||||||| ||||||||   |    
T  40580966 cttgcaaaaacttaattcctcacacttttcatggatcatcatacgtatcaaatcgtgaacaaaacaacttttagtttttccatcaattctaattgaggat 40580867  T
Q  236 acttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatcc 335  Q
    |||||||||||||  | ||  ||||| || ||||||||| | || ||||| |||||||| || ||| | || || || ||||| || |||||||| ||||    
T  40580866 acttgcaccaaactacgacgaatcaactcagttaaatatacttcagcaacttcttccaaagtctttccactttcctccttcacaaacccttcagctatcc 40580767  T
Q  336 a 336  Q
    |    
T  40580766 a 40580766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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