View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_37 (Length: 389)
Name: NF19773_low_37
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 11033868 - 11034229
Alignment:
| Q |
19 |
catacattgatagatgtttccgtcgccatttgtagattactagtgcaatgatcaatggcgctccaagaacaaatttaacaccgctaagaaaaacaatcaa |
118 |
Q |
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| T |
11033868 |
catacattgatagatgtttccgtcgccatttgtagattactagtgcaatgatcaatggcgctccaagaacaaatttaacaccgctaagaaaaacaaccaa |
11033967 |
T |
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| Q |
119 |
tgcaactgcaaagtgaaaactgaaaaatatgatgcgatacatttcaatcaatgttatagtccacgtttcgaaaagaacagaatatgggtaggcaaccaaa |
218 |
Q |
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| T |
11033968 |
tgcaactgcaaagtgaaaactgaaaaatatgatgctatacatttcaatcaatgttatagtccacgtttcgaaaagaacagaatatgggtaggcaaccaaa |
11034067 |
T |
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| Q |
219 |
taactcatgcgaaaaatattgcccaatattacttactattgacaagttttttagaagaaaagacatcatactaacaacagaacaagnnnnnnnnnatagt |
318 |
Q |
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| T |
11034068 |
taactcatgcgaaaaatattgcccaata----ttactatttacaagttttttagaagaaaagacatcatactaacaacagaacaag-ttttttttatagt |
11034162 |
T |
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| Q |
319 |
ttttgtactgaaaatttgttttctaaactttattttaagtcttatgtcttgcttacctatgctactc |
385 |
Q |
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| T |
11034163 |
ttttgtactgaaaatttgttttctaaactttattttaagtcttatgtcttgcttacctgtgcgactc |
11034229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 10915276 - 10915358
Alignment:
| Q |
19 |
catacattgatagatgtttccgtcgccatttgtagattactagtgcaatgatcaatggcgctccaagaacaaatttaacaccg |
101 |
Q |
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| T |
10915276 |
catacatagagaaatgtttccgtctccatttgtagattaataatgcaatgatacatggcgctccaagaacaaatttaaaaccg |
10915358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 11008415 - 11008515
Alignment:
| Q |
19 |
catacattgatagatgtttccgtcgccatttgtagattactagtgcaatgatcaatggcgctccaagaacaaatttaacaccgctaagaaaaacaatcaa |
118 |
Q |
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| T |
11008415 |
catacatagattgatgtttctttcgccattttttgattaataatacaatgataaatggcaatccaagaacaaatttaacaccgctaagcaaaccaaccaa |
11008514 |
T |
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| Q |
119 |
t |
119 |
Q |
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| T |
11008515 |
t |
11008515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 11011577 - 11011654
Alignment:
| Q |
19 |
catacattgatagatgtttccgtcgccatttgtagattactagtgcaatgatcaatggcgctccaagaacaaatttaa |
96 |
Q |
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| T |
11011577 |
catacatagatagatgcttccgtcgccatttgtagattaataatacaatcatacatagtgctccaagaacaaatttaa |
11011654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 10984209 - 10984280
Alignment:
| Q |
27 |
gatagatgtttccgtcgccatttgtagattactagtgcaatgatcaatggcgctccaagaacaaatttaaca |
98 |
Q |
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| T |
10984209 |
gataaatgttcccgtcgacatttgtagattaataatacaatgatgcaaggcgctccaaggacaaatttaaca |
10984280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 11008601 - 11008683
Alignment:
| Q |
127 |
caaagtgaaaactgaaaaatatgatgcgatacatttcaatcaatgttatagtccac-gtttcgaaaagaacagaatatgggta |
208 |
Q |
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| T |
11008601 |
caaagtgaaaaccgaaaaatttgatgtgatgtatttcaatcaaagttatactcaacttttttaaaaagaacagaatatgggta |
11008683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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