View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_38 (Length: 386)
Name: NF19773_low_38
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 8565566 - 8565755
Alignment:
| Q |
1 |
atttggaaataactaccattcttggtgaacaaaaatcaaaaatcgcatcattatatcaatttgtaattgttaaataatatgttaaannnnnnnnaaggaa |
100 |
Q |
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| T |
8565566 |
atttggaaataactaccattcttggtgaacaaaaatcaaaaatcgcatcattatatcaatttgtaattgttaaataatatgttaaattttttttaaggaa |
8565665 |
T |
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| Q |
101 |
aataatatgttaattggtaattgttattttataatnnnnnnnnnntgaaatgttgactatatgcttgcatacattttgaagaaaagttga |
190 |
Q |
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| T |
8565666 |
aataatatgttaattggtaattgttattttataataaaaaaaaaatgaaatgttgactatatgcttacatacattttgaagaaaagttga |
8565755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 8565844 - 8565936
Alignment:
| Q |
281 |
ctcatgagttttcaaaatttcatattatcgactttctcaaattgtggtataaaaatttgtttccgcatatataaatacttaaattccacaggt |
373 |
Q |
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| T |
8565844 |
ctcatgagttttcaaaatttcatattatcgactttctcaaattgtggtataaaaatttgtttccgcatatataaatacttaaattccacaggt |
8565936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 36648231 - 36648195
Alignment:
| Q |
327 |
gtataaaaatttgtttccgcatatataaatacttaaa |
363 |
Q |
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| T |
36648231 |
gtataaaaagttgtttccacatatataaatacttaaa |
36648195 |
T |
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