View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_39 (Length: 385)
Name: NF19773_low_39
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 112 - 369
Target Start/End: Original strand, 6450541 - 6450798
Alignment:
| Q |
112 |
tggcgattgaaaaacacatgcgaatgtgatgaaaatcgatatacgacagaagatgaattgaggtgagagacacacaagacatggaatatttgaacacgga |
211 |
Q |
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| T |
6450541 |
tggcgattgaaaaacacgcgcgaatgtgatgaaaatcgatatacgacagaagatgaattgaggtgagagacacacaagacatggaatatttgaacacgga |
6450640 |
T |
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| Q |
212 |
gagggaatattggattgcaacattacataattagacaaatgctagggtttcaatttttaaatgttaacgttggaagcagacgattgtttggaatcatttc |
311 |
Q |
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| T |
6450641 |
gagggaatattggattgcaacattacataattagacaaatgctagggtttcaatttttaaatgttaacgttggaagcagacgattgtttggaatcatttc |
6450740 |
T |
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| Q |
312 |
taaaattcctacttgcacttccttccatgctttgtcttcactcttaagtattgcatgt |
369 |
Q |
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| T |
6450741 |
taaaattcctacttgcacttccttccatgctttgtcttgactcttaagtattgcatgt |
6450798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 6450490 - 6450542
Alignment:
| Q |
17 |
caaaggaagagactatagcctagacaaggtcacgccgacgagtcacgtgagtg |
69 |
Q |
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| T |
6450490 |
caaaggaagagactatagcctagacaaggtcacgccgacgagtcacgtgagtg |
6450542 |
T |
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