View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_4 (Length: 688)

Name: NF19773_low_4
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_4
NF19773_low_4
[»] chr6 (4 HSPs)
chr6 (20-228)||(2053032-2053237)
chr6 (352-564)||(2053299-2053519)
chr6 (624-678)||(2047118-2047172)
chr6 (168-220)||(1315073-1315126)
[»] chr5 (3 HSPs)
chr5 (162-305)||(683398-683542)
chr5 (162-228)||(25025762-25025829)
chr5 (176-208)||(35537199-35537231)
[»] chr1 (4 HSPs)
chr1 (160-221)||(9710166-9710228)
chr1 (156-228)||(40304448-40304521)
chr1 (158-195)||(48466047-48466084)
chr1 (157-228)||(6556607-6556679)
[»] chr2 (2 HSPs)
chr2 (164-228)||(38833777-38833842)
chr2 (161-228)||(7213885-7213953)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 5e-67; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 2053032 - 2053237
Alignment:
Q  20 ttctgtcaaattttattcatattaatcactccctgtatgctagaaactaaattgatagtgagtagttaagtcgaaagactgaatcaatgataagttgttg 119  Q
    |||||||||||||||| ||||||||||| | |||||||||||||||||||||| || || ||||||||| | ||||||||||||||||  ||||||||||    
T  2053032 ttctgtcaaattttatacatattaatcaatacctgtatgctagaaactaaattcatggtaagtagttaaatagaaagactgaatcaatagtaagttgttg 2053131  T
Q  120 aaatatagggacttaattgttatcttaagtgatttatgagagtatgttagggtctaaattgatagtaagtggttaatataaggaccaaatcgatagtaag 219  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||     
T  2053132 aaatatagggacttaa--gttatcttaagtggtttatgagagtatgttagggtctaaattg-tagtaagtggttaatataagaaccaaattgatagtaac 2053228  T
Q  220 tttttaaaa 228  Q
    || ||||||    
T  2053229 ttgttaaaa 2053237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 352 - 564
Target Start/End: Original strand, 2053299 - 2053519
Alignment:
Q  352 aatttagtagtttactttataatttttgtggtagggtaaactttcactcttcctat------aatg---gcattaagaaaattagagttcacacaaaatt 442  Q
    ||||| |||||||||||||||||| |||||| | |||||||||||| ||||||||       ||||   | ||||||||||||| |||| ||||||||||    
T  2053299 aatttggtagtttactttataattattgtggcaaggtaaactttcattcttcctaatactaaaatgtaggtattaagaaaattatagtttacacaaaatt 2053398  T
Q  443 tccatggtaataaaaagttagcaagattttggcaaacacaaaaaatcagtaaggtgaattacttccaaaaagcatattaaaatnnnnnnnntgttgtctc 542  Q
    ||||||||||||||||||||||||||||||  |||||||| ||| ||| |||||||||||||||||||||||||||| |||||        |||||||||    
T  2053399 tccatggtaataaaaagttagcaagattttctcaaacacataaagtcactaaggtgaattacttccaaaaagcatatcaaaat-aaaaaaatgttgtctc 2053497  T
Q  543 agaatgaacttaaaaaatgtta 564  Q
    |||||||| |||||||||||||    
T  2053498 agaatgaatttaaaaaatgtta 2053519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 624 - 678
Target Start/End: Original strand, 2047118 - 2047172
Alignment:
Q  624 gattttaatttagttcaatattgttacttagatcttaattagtttcttatctctg 678  Q
    |||| |||||||||||| ||||||||||||||| |||||| ||||||||||||||    
T  2047118 gattctaatttagttcattattgttacttagatgttaatttgtttcttatctctg 2047172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 1315126 - 1315073
Alignment:
Q  168 agggtctaaattgatagtaagtggtt-aatataaggaccaaatcgatagtaagt 220  Q
    |||| ||||||||||| ||||||||| |||||||||| ||||| ||||||||||    
T  1315126 agggactaaattgatattaagtggttaaatataaggatcaaattgatagtaagt 1315073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 683542 - 683398
Alignment:
Q  162 tatgttagggtctaaattgatagtaagtggttaatataaggaccaaatcgatagtaagtttttaaaacagaaagact-aattgatattaaggggctaaaa 260  Q
    |||| ||||| ||| |||||||||| ||||  ||  || ||| ||||| |||||||| || |||||| | || |||| |||||||| |||| || ||||     
T  683542 tatgctagggactacattgatagtaggtggaaaacttagggatcaaattgatagtaaattattaaaatataaggacttaattgataataagtggttaaat 683443  T
Q  261 ataaggatcaacttgaaaatttaatagagtcacacacctttttga 305  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||    
T  683442 ataaggatcaacttgacaatttaatagagtcagagacctttttga 683398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 25025762 - 25025829
Alignment:
Q  162 tatgttagggtctaaattgatagtaagtggtt-aatataaggaccaaatcgatagtaagtttttaaaa 228  Q
    |||||||||| ||||||||||||||||||||| || ||||  | ||||| ||||||||| ||||||||    
T  25025762 tatgttagggactaaattgatagtaagtggttaaagataataatcaaatagatagtaagcttttaaaa 25025829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 35537199 - 35537231
Alignment:
Q  176 aattgatagtaagtggttaatataaggaccaaa 208  Q
    |||||||||||||||||||||||||||| ||||    
T  35537199 aattgatagtaagtggttaatataaggatcaaa 35537231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 9710228 - 9710166
Alignment:
Q  160 agtatgttagggtctaaattgatagtaagtggtta-atataaggaccaaatcgatagtaagtt 221  Q
    ||||||| |||| ||||||||||||||||| |||| ||||||||||| ||| |||||||||||    
T  9710228 agtatgtgagggactaaattgatagtaagttgttatatataaggacctaattgatagtaagtt 9710166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 40304521 - 40304448
Alignment:
Q  156 tgagagtatgttagggtctaaattgatagtaagtggttaa-tataaggaccaaatcgatagtaagtttttaaaa 228  Q
    |||||||||||||| | ||||||| ||||||||||||||| |||||||||  ||| |||| |||||| ||||||    
T  40304521 tgagagtatgttagtgactaaattaatagtaagtggttaattataaggactgaattgataataagttattaaaa 40304448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 48466084 - 48466047
Alignment:
Q  158 agagtatgttagggtctaaattgatagtaagtggttaa 195  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  48466084 agagtatgttagggactaaattgatagtaagttgttaa 48466047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 6556679 - 6556607
Alignment:
Q  157 gagagtatgttagggtctaaattgatagtaagtggtt-aatataaggaccaaatcgatagtaagtttttaaaa 228  Q
    ||||||||| ||| | |||||||||||||||| |||| |||||||  ||||| | ||||||||||| ||||||    
T  6556679 gagagtatgctagagactaaattgatagtaagcggttaaatataaaaaccaagttgatagtaagttgttaaaa 6556607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 38833777 - 38833842
Alignment:
Q  164 tgttagggtctaaattgatagtaagtggtt-aatataaggaccaaatcgatagtaagtttttaaaa 228  Q
    |||||||| ||||||||||| ||||||||| || |||| || ||||| |||||||| |||||||||    
T  38833777 tgttagggactaaattgataataagtggttaaacataaagatcaaattgatagtaaatttttaaaa 38833842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 7213953 - 7213885
Alignment:
Q  161 gtatgttagggtctaaattgatagtaagtggttaa-tataaggaccaaatcgatagtaagtttttaaaa 228  Q
    |||||||| || ||||||||||||||| || || | |||||||| ||||| ||||||||||| ||||||    
T  7213953 gtatgttaaggactaaattgatagtaaatgattgactataaggatcaaattgatagtaagttattaaaa 7213885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University