View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_40 (Length: 384)
Name: NF19773_low_40
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 4845308 - 4844979
Alignment:
| Q |
19 |
agctagagcagatctagtatgcagcatgtcgtgaaaaattctctattcaattaaaacatggacctttgatggaacctcacaacgccaaacacctgtaaaa |
118 |
Q |
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| T |
4845308 |
agctagagcagatctagtgtgcaacatgtcatgaaaaattatctattcaattaaaacagggacctttgatggaacctcacaacactaaacacctgtaaaa |
4845209 |
T |
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| Q |
119 |
atcttgctcatatctcgattaatgactgttgaatattttgcatgaagcatgacttgaaagcttgacctggcggtatatatatatcaagaacatcatgttt |
218 |
Q |
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| T |
4845208 |
atcttgctcatatctcgattaatgactgttgaatattttgcatgaagcatgacttgaaagcatgacatagtggtatatatat--caagaacatcatgttt |
4845111 |
T |
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| Q |
219 |
tcgtgcccacacgtgggaagctagtatatcttggcctatacatacccattaacaacaaaagtagatcaacaactaaatcatcctcccaagagaataaatc |
318 |
Q |
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| T |
4845110 |
tcgtgcccacacgtgggaagctagtatatcttggcctatacatacccattaacaacaaaagtagatcaacaactaaatcatcctccaaagagaataaatt |
4845011 |
T |
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| Q |
319 |
tcgacgcaaacacagcctccaagaatgactat |
350 |
Q |
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| T |
4845010 |
tcgacgtaaacacagcctccaagaatgactat |
4844979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 71 - 340
Target Start/End: Complemental strand, 4799973 - 4799710
Alignment:
| Q |
71 |
aaaacatggacctttgatggaacctcacaacgccaaacacctgtaaaaatcttgctcatatctcgattaatgactgttgaatattttgcatgaagcatga |
170 |
Q |
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| T |
4799973 |
aaaacacggacctttgacagaacctcacaacttcaatcaccactaaaaaccttgctcaaatctggattcatgactgctgaatatcttgcatgaagcacaa |
4799874 |
T |
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| Q |
171 |
cttgaaagcttgacctggcggtatatatatatcaagaacatcatgttttcgtgcccacacgtgggaagctagtatatcttggcctatacatacccattaa |
270 |
Q |
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| T |
4799873 |
cttgaaagctggacctggcag--tatatccggcaagaacatcaagtttccatgcccacttgtgtgaagctagtatgccttggctt----ataccaatcaa |
4799780 |
T |
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| Q |
271 |
caacaaaagtagatcaacaactaaatcatcctcccaagagaataaatctcgacgcaaacacagcctccaa |
340 |
Q |
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| T |
4799779 |
caacaaaagtagatcaacaactaaatcatcctcccaagcgaatatatttcgaggcaaatgcagcctccaa |
4799710 |
T |
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