View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_41 (Length: 375)
Name: NF19773_low_41
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 93 - 360
Target Start/End: Complemental strand, 52576193 - 52575932
Alignment:
| Q |
93 |
aactttaatataaaacggtaacatgtcatgtcaaaatttggttatttcagaaagtaacgagaactacaatgtggcggatcccaacagttaaagttaaaca |
192 |
Q |
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| T |
52576193 |
aactctaatataaaatggtaacatgtcatgtcaaaatttggttatttcagaaagtaacgagaactacaatgtggcggatcccaacagttaaagttaaaca |
52576094 |
T |
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| Q |
193 |
aacaacaaacaaaattccacacatctaggaactccaagctaacagacccgttggagttgctcttagcatcatgtca--annnnnnnnnnnacttatgctt |
290 |
Q |
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| T |
52576093 |
a-------acaaaattccacacatctaggaactccaagctaacagacccgttggagttgctcttagcatcatgtcattttttttttttttacttatgctt |
52576001 |
T |
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| Q |
291 |
aaatgccttttggtccctctannnnnnnnagacaaaaatgaagttttggtccttctatcccaattttaat |
360 |
Q |
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| T |
52576000 |
aaatgccttttggtccctcta-ttttttaagacaaaaatgaagttttggtccttctatcccaattttaat |
52575932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 52576461 - 52576373
Alignment:
| Q |
18 |
aggtctattactctatttatttactttcatttttagctgcgttataaaaaatcactatgttattacttttattttaactttaatataaa |
106 |
Q |
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| T |
52576461 |
aggtctattactctatttattaactttcatttttagctgcgttataagaaatcactatgttattacttttattttaactttaatataaa |
52576373 |
T |
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