View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_46 (Length: 357)

Name: NF19773_low_46
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_46
NF19773_low_46
[»] chr8 (12 HSPs)
chr8 (1-338)||(1781611-1781948)
chr8 (258-329)||(18608732-18608803)
chr8 (259-325)||(10341065-10341131)
chr8 (259-329)||(25953263-25953333)
chr8 (1-52)||(1771046-1771097)
chr8 (259-329)||(34108259-34108329)
chr8 (259-325)||(43956957-43957023)
chr8 (259-329)||(14315015-14315085)
chr8 (259-329)||(14318719-14318789)
chr8 (259-329)||(18494280-18494350)
chr8 (259-329)||(26981980-26982050)
chr8 (259-329)||(26987093-26987163)
[»] chr4 (12 HSPs)
chr4 (259-325)||(18737192-18737258)
chr4 (259-325)||(18670870-18670936)
chr4 (259-324)||(32429392-32429457)
chr4 (267-338)||(47071446-47071517)
chr4 (267-325)||(18716527-18716585)
chr4 (259-329)||(30019954-30020024)
chr4 (259-325)||(34128345-34128411)
chr4 (259-329)||(34279595-34279665)
chr4 (267-326)||(54859264-54859323)
chr4 (267-329)||(14643834-14643896)
chr4 (259-329)||(3424803-3424874)
chr4 (259-329)||(35096058-35096128)
[»] chr1 (13 HSPs)
chr1 (259-329)||(17414640-17414710)
chr1 (259-329)||(35626202-35626272)
chr1 (259-329)||(10186683-10186753)
chr1 (259-329)||(43358783-43358853)
chr1 (261-329)||(19310856-19310924)
chr1 (267-325)||(21431780-21431838)
chr1 (259-325)||(44524130-44524196)
chr1 (259-329)||(1187858-1187927)
chr1 (259-329)||(3465503-3465573)
chr1 (259-329)||(3468097-3468167)
chr1 (259-329)||(28574327-28574397)
chr1 (259-329)||(28598339-28598409)
chr1 (259-325)||(13654365-13654433)
[»] chr3 (22 HSPs)
chr3 (261-329)||(18024252-18024320)
chr3 (259-329)||(20891089-20891159)
chr3 (259-326)||(3187561-3187628)
chr3 (259-329)||(5458116-5458186)
chr3 (259-329)||(5481592-5481662)
chr3 (259-329)||(6858159-6858229)
chr3 (259-329)||(8458341-8458411)
chr3 (259-329)||(8464780-8464850)
chr3 (259-325)||(29827454-29827520)
chr3 (259-325)||(49784526-49784592)
chr3 (259-329)||(1302349-1302419)
chr3 (259-329)||(4049837-4049907)
chr3 (267-329)||(6853056-6853118)
chr3 (259-329)||(10584962-10585032)
chr3 (259-329)||(10591399-10591469)
chr3 (259-329)||(10673042-10673112)
chr3 (259-329)||(10678157-10678227)
chr3 (259-329)||(31076506-31076576)
chr3 (259-329)||(31081611-31081681)
chr3 (259-329)||(33702704-33702774)
chr3 (259-329)||(33703329-33703399)
chr3 (259-329)||(4054971-4055041)
[»] chr7 (12 HSPs)
chr7 (259-325)||(4181490-4181556)
chr7 (259-329)||(14610394-14610464)
chr7 (268-328)||(5440393-5440453)
chr7 (268-328)||(5449403-5449463)
chr7 (270-329)||(37459945-37460004)
chr7 (259-329)||(12851704-12851774)
chr7 (259-329)||(12856819-12856889)
chr7 (259-329)||(26051051-26051121)
chr7 (259-329)||(26056164-26056234)
chr7 (259-329)||(26060410-26060480)
chr7 (259-329)||(26065523-26065593)
chr7 (259-324)||(11056655-11056720)
[»] chr6 (9 HSPs)
chr6 (259-329)||(24508932-24509002)
chr6 (259-325)||(2887520-2887586)
chr6 (259-329)||(21936784-21936854)
chr6 (259-325)||(2889242-2889308)
chr6 (259-329)||(11183270-11183340)
chr6 (267-329)||(24509741-24509803)
chr6 (259-329)||(21275803-21275873)
chr6 (259-327)||(21937600-21937668)
chr6 (259-329)||(20752222-20752292)
[»] chr2 (7 HSPs)
chr2 (259-323)||(716297-716361)
chr2 (259-329)||(30283545-30283615)
chr2 (259-329)||(14917486-14917556)
chr2 (259-325)||(16284467-16284534)
chr2 (259-329)||(17720630-17720700)
chr2 (259-329)||(45120416-45120486)
chr2 (259-303)||(42780214-42780258)
[»] chr5 (10 HSPs)
chr5 (259-329)||(13556409-13556479)
chr5 (259-318)||(35369006-35369065)
chr5 (267-338)||(43540854-43540925)
chr5 (259-329)||(2022994-2023064)
chr5 (259-329)||(4555683-4555753)
chr5 (259-329)||(9877643-9877713)
chr5 (259-329)||(39903875-39903945)
chr5 (259-329)||(39908988-39909058)
chr5 (259-329)||(9872528-9872598)
chr5 (267-323)||(25184130-25184186)
[»] scaffold0005 (1 HSPs)
scaffold0005 (267-329)||(173396-173458)
[»] scaffold0223 (1 HSPs)
scaffold0223 (259-328)||(2124-2193)
[»] scaffold0006 (1 HSPs)
scaffold0006 (259-325)||(144126-144194)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 1781611 - 1781948
Alignment:
Q  1 ggtcaatggtaaagagtaataaaagattcatatgctttaattacatccatcctcgtnnnnnnnttattgttggtgttcagtcatttcgactattcaacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  1781611 ggtcaatggtaaagagtaataaaagattcatatgctttaattacatccatcctcgtaaaaaaattattgttggtgttcagtcatttcgactattcaacca 1781710  T
Q  101 catgttgacaagccacttgcaaagcaaatagaatgatgaatttggtgatagaaacgataagtcttttactcaaatacaataatgacaaaataatcgctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781711 catgttgacaagccacttgcaaagcaaatagaatgatgaatttggtgatagaaacgataagtcttttactcaaatacaataatgacaaaataatcgctct 1781810  T
Q  201 caaacgtttcaacaaacacatggagtacacacatgaagcaaattaaaataattgtgaaactcatgaattagagaattggtggatgattttgagtaagaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781811 caaacgtttcaacaaacacatggagtacacacatgaagcaaattaaaataattgtgaaactcatgaattagagaattggtggatgattttgagtaagaga 1781910  T
Q  301 atgagggataattatgttgttaatgtaacggaatttct 338  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1781911 atgagggataattatgttgttaatgtaacggaatttct 1781948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 18608803 - 18608732
Alignment:
Q  258 aactcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    |||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  18608803 aactcatgcattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatgtaac 18608732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 10341131 - 10341065
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 325  Q
    ||||||| |||||||||||  |||||||||| |||||||||||||||||| ||||||||||||||||    
T  10341131 actcatgcattagagaatttatggatgatttagagtaagagaatgagggagaattatgttgttaatg 10341065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 25953333 - 25953263
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||| ||||| |||||||||| ||||| |||||||| ||| ||||||||||||||||||||    
T  25953333 actcatgcattagacaattgatggatgatttagagtatgagaatgatggagaattatgttgttaatgtaac 25953263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1771046 - 1771097
Alignment:
Q  1 ggtcaatggtaaagagtaataaaagattcatatgctttaattacatccatcc 52  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||||||    
T  1771046 ggtcaatggtaaagagtaataaaagattcatagactttaattgcatccatcc 1771097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 34108259 - 34108329
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  34108259 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 34108329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 43957023 - 43956957
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 325  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||| | | ||||||||||||||||    
T  43957023 actcatgcattagagaattgatggatgatttagaataagagaatgatgaagaattatgttgttaatg 43956957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 14315085 - 14315015
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  14315085 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 14315015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 14318789 - 14318719
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  14318789 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 14318719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 18494350 - 18494280
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  18494350 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 18494280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 26982050 - 26981980
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26982050 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26981980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 26987163 - 26987093
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26987163 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26987093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 18737192 - 18737258
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 325  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||    
T  18737192 actcatgaattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatg 18737258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 18670870 - 18670936
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 325  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||    
T  18670870 actcatgcattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatg 18670936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 32429457 - 32429392
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaat 324  Q
    ||||||| |||| ||||||| |||||||||| |||||||||||||||||| |||||||||||||||    
T  32429457 actcatgcattaaagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaat 32429392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 338
Target Start/End: Original strand, 47071446 - 47071517
Alignment:
Q  267 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttct 338  Q
    |||||||||||| | ||| |||| |||||||||||||||||| ||||||||||||||||||||  |||||||    
T  47071446 attagagaattgatagataatttagagtaagagaatgagggagaattatgttgttaatgtaacaaaatttct 47071517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 18716527 - 18716585
Alignment:
Q  267 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 325  Q
    |||||||||||| |||||||||| ||||||||||||| |||| ||||||||||||||||    
T  18716527 attagagaattgatggatgatttagagtaagagaatgggggagaattatgttgttaatg 18716585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 30020024 - 30019954
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||  | | ||||||||||||||||||||    
T  30020024 actcatgcattagagaattgatggatgatttagagtaagagaatggtgaagaattatgttgttaatgtaac 30019954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 34128411 - 34128345
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 325  Q
    ||||||| |||||| ||||| |||||||||| |||||||||||||||||| ||||||| ||||||||    
T  34128411 actcatgcattagaaaattgatggatgatttagagtaagagaatgagggagaattatgatgttaatg 34128345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 34279665 - 34279595
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| ||| |||||| ||||||||||| |||| | ||||||||||||||||||||    
T  34279665 actcatgcattagagaattgatggttgatttagagtaagagaacgaggaagaattatgttgttaatgtaac 34279595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 54859323 - 54859264
Alignment:
Q  267 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgt 326  Q
    |||||||||||| |||||||||| ||| |||||||||||||| ||| |||||||||||||    
T  54859323 attagagaattgatggatgatttagagcaagagaatgagggagaatcatgttgttaatgt 54859264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 14643896 - 14643834
Alignment:
Q  267 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    |||||||||||| |||||||||| |||||||||||| ||| | |||||||||||| |||||||    
T  14643896 attagagaattgatggatgatttagagtaagagaattaggaagaattatgttgttgatgtaac 14643834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 3424874 - 3424803
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggata-attatgttgttaatgtaac 329  Q
    ||||||| |||||||||||  |||||||||| |||||||||||||||||| |  |||||||||||| |||||    
T  3424874 actcatgcattagagaattaatggatgatttagagtaagagaatgagggagatcttatgttgttaaagtaac 3424803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 35096058 - 35096128
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  35096058 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 35096128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 17414710 - 17414640
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  17414710 actcatgcattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatgtaac 17414640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 35626202 - 35626272
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  35626202 actcatgcattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatgtaac 35626272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 10186753 - 10186683
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  10186753 actcatgcattagagaattgatggatgatttagagtaagagaatgatggagaattatgttgttaatgtaac 10186683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 43358783 - 43358853
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  43358783 actcatgcattagagaattgatggataatttagagtaagagaatgagggagaattatgttgttaatgtaac 43358853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 19310856 - 19310924
Alignment:
Q  261 tcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||| |||||||||||| ||||||||||  ||||||||||||||||| |||||| |||||||||||||    
T  19310856 tcatgcattagagaattgatggatgatttatagtaagagaatgagggagaattatattgttaatgtaac 19310924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 21431838 - 21431780
Alignment:
Q  267 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 325  Q
    |||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||    
T  21431838 attagagaattgatggatgatttagattaagagaatgagggagaattatgttgttaatg 21431780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 44524196 - 44524130
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 325  Q
    ||||||| |||||||||||| ||||||||||  ||||||||||||| ||| ||||||||||||||||    
T  44524196 actcatgcattagagaattgatggatgatttaaagtaagagaatgatggagaattatgttgttaatg 44524130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 1187858 - 1187927
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||| ||||||| |||||||||| |||||||||||||| ||| | ||||||||||||||||||    
T  1187858 actcatgcattaaagaattgatggatgatttagagtaagagaatga-ggagatttatgttgttaatgtaac 1187927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 3465503 - 3465573
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  3465503 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 3465573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 3468097 - 3468167
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  3468097 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 3468167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 28574327 - 28574397
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  28574327 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 28574397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 28598339 - 28598409
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  28598339 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 28598409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 13654365 - 13654433
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagt--aagagaatgagggataattatgttgttaatg 325  Q
    ||||||| |||||||||||  |||||||||| |||   |||||||||||||| ||||||||||||||||    
T  13654365 actcatgcattagagaattaatggatgatttagagagcaagagaatgagggagaattatgttgttaatg 13654433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 18024320 - 18024252
Alignment:
Q  261 tcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||| |||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  18024320 tcatgcattagagaattgatgaatgatttagagtaagagaatgagggagaattatgttgttaatgtaac 18024252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 20891089 - 20891159
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| ||||||| |||||||||| |||||||||||| |||||||    
T  20891089 actcatgcattagagaattgatggatgatttagagtaagcgaatgagggagaattatgttgtttatgtaac 20891159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 3187628 - 3187561
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgt 326  Q
    ||||||| |||| ||||||| | |||||||| |||||||||||||||||| |||||||||||||||||    
T  3187628 actcatgcattaaagaattgatagatgatttagagtaagagaatgagggagaattatgttgttaatgt 3187561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 5458186 - 5458116
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  5458186 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 5458116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 5481662 - 5481592
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  5481662 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 5481592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 6858229 - 6858159
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  6858229 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 6858159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 8458341 - 8458411
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  8458341 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 8458411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 8464780 - 8464850
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  8464780 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 8464850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 29827454 - 29827520
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 325  Q
    ||||||| |||||||||||| || ||||||| |||||||||||||||||| ||||| ||| ||||||    
T  29827454 actcatgcattagagaattgatgaatgatttagagtaagagaatgagggagaattaggttattaatg 29827520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 49784526 - 49784592
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 325  Q
    |||||||||||||||||||| | ||||||||  ||||| ||||||||||  ||||||||||||||||    
T  49784526 actcatgaattagagaattgatagatgatttaaagtaaaagaatgagggggaattatgttgttaatg 49784592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 1302419 - 1302349
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  1302419 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 1302349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 4049837 - 4049907
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  4049837 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 4049907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 6853118 - 6853056
Alignment:
Q  267 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  6853118 attagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 6853056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 10585032 - 10584962
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| |   ||||||||||||||||||||    
T  10585032 actcatgcattagagaattgatggatgatttagaataatagaatgatgaggaattatgttgttaatgtaac 10584962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 10591469 - 10591399
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| |   ||||||||||||||||||||    
T  10591469 actcatgcattagagaattgatggatgatttagaataatagaatgatgaggaattatgttgttaatgtaac 10591399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 10673112 - 10673042
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  10673112 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 10673042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 10678227 - 10678157
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  10678227 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 10678157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 31076576 - 31076506
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  31076576 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 31076506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 31081681 - 31081611
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  31081681 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 31081611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 33702774 - 33702704
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  33702774 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 33702704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 33703329 - 33703399
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  33703329 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 33703399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 4054971 - 4055041
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||| ||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  4054971 actcatgcattaaagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 4055041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 4181556 - 4181490
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 325  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||    
T  4181556 actcatgcattagagaattgatggatgatttagattaagagaatgagggagaattatgttgttaatg 4181490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 14610394 - 14610464
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||| | | ||||||||||||||||||||    
T  14610394 actcatgcattagagaattgatggatgatttagaataagagaatgatgaagaattatgttgttaatgtaac 14610464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 5440453 - 5440393
Alignment:
Q  268 ttagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaa 328  Q
    ||||||||||| | |||||||| ||||||| |||||||||| |||||||||||||||||||    
T  5440453 ttagagaattgatcgatgatttagagtaagggaatgagggagaattatgttgttaatgtaa 5440393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 5449463 - 5449403
Alignment:
Q  268 ttagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaa 328  Q
    ||||||||||| | |||||||| ||||||| |||||||||| |||||||||||||||||||    
T  5449463 ttagagaattgatcgatgatttagagtaagggaatgagggagaattatgttgttaatgtaa 5449403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 37460004 - 37459945
Alignment:
Q  270 agagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||||| |||||||||| ||||||||||||| |||| |||||||||||| |||||||    
T  37460004 agagaattgatggatgatttagagtaagagaatgtgggagaattatgttgttcatgtaac 37459945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 12851704 - 12851774
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  12851704 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 12851774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 12856819 - 12856889
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  12856819 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 12856889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 26051051 - 26051121
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26051051 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26051121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 26056164 - 26056234
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26056164 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26056234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 26060410 - 26060480
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26060410 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26060480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 26065523 - 26065593
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26065523 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26065593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 11056655 - 11056720
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaat 324  Q
    ||||||| |||| ||||||| ||||||||||  |||||||||||||   | |||||||||||||||    
T  11056655 actcatgcattaaagaattgatggatgatttaaagtaagagaatgataaagaattatgttgttaat 11056720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 24509002 - 24508932
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| |||||| ||||||| ||| ||||||||||||||||||||    
T  24509002 actcatgcattagagaattgatggatgatttagagtaaaagaatgatggagaattatgttgttaatgtaac 24508932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 2887520 - 2887586
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 325  Q
    ||||||| |||||||| ||| |||||||||| |||||||||||||||||| |||||||||| |||||    
T  2887520 actcatgcattagagagttgatggatgatttagagtaagagaatgagggagaattatgttggtaatg 2887586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 21936854 - 21936784
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| | |||||||| ||||| |||||||| ||| ||||||||||||||||||||    
T  21936854 actcatgcattagagaattgatagatgatttagagtatgagaatgatggagaattatgttgttaatgtaac 21936784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 2889242 - 2889308
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 325  Q
    ||||||| |||||||| ||| || ||||||| |||||||||||||||||| |||||||||| |||||    
T  2889242 actcatgcattagagagttgatgaatgatttagagtaagagaatgagggagaattatgttggtaatg 2889308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 11183340 - 11183270
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| | |||||||| ||||||||||||||| || ||||||||| ||| ||||||    
T  11183340 actcatgcattagagaattgattgatgatttagagtaagagaatgagagagaattatgttattattgtaac 11183270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 24509741 - 24509803
Alignment:
Q  267 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    |||||||||||| ||||||||||  ||||| ||||||| ||| ||||||||||||||||||||    
T  24509741 attagagaattgatggatgatttaaagtaaaagaatgatggagaattatgttgttaatgtaac 24509803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 21275803 - 21275873
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  21275803 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 21275873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 21937600 - 21937668
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgta 327  Q
    ||||||| ||| |||||||| |||||| ||| || ||||||| ||| ||| ||||||||||||||||||    
T  21937600 actcatgcatttgagaattgatggatgttttagaataagagagtgatggaaaattatgttgttaatgta 21937668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 20752292 - 20752222
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| || ||||||||| ||||||| ||  ||||||||||||  | | ||||||||||||||||||||    
T  20752292 actcatgcatcagagaattgatggatgacttatagtaagagaatggtgaagaattatgttgttaatgtaac 20752222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 716297 - 716361
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaa 323  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||||    
T  716297 actcatgcattagagaattgatggatgatttagagtaagagaatgaaggagaattatgttgttaa 716361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 30283615 - 30283545
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| | |||||||| ||||||||||| || ||| ||||||||||||||||||||    
T  30283615 actcatgcattagagaattgattgatgatttagagtaagagaaggatggagaattatgttgttaatgtaac 30283545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 14917556 - 14917486
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  14917556 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 14917486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 16284467 - 16284534
Alignment:
Q  259 actcatgaattagagaattggtggatgatttt-gagtaagagaatgagggataattatgttgttaatg 325  Q
    ||||||| |||||||| ||| || |||||||| |||||||||||||||||| |||||| |||||||||    
T  16284467 actcatgcattagagagttgatgaatgattttagagtaagagaatgagggagaattatattgttaatg 16284534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 17720700 - 17720630
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  17720700 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 17720630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 45120416 - 45120486
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| ||| |||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  45120416 actcatgcattggagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 45120486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 42780214 - 42780258
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatg 303  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||    
T  42780214 actcatgcattagagaattgatggatgatttagagtaagagaatg 42780258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 13556479 - 13556409
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||| | | ||||||||||||||||||||    
T  13556479 actcatgcattagagaattgatggatgatttagaataagagaatgatgaagaattatgttgttaatgtaac 13556409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 35369065 - 35369006
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgtt 318  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||| | |||||||||    
T  35369065 actcatgcattagagaattgatggatgatttagagtaagagaatgaggaagaattatgtt 35369006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 43540925 - 43540854
Alignment:
Q  267 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttct 338  Q
    |||||||||||| | |||||||| |||||||||||||| ||| || |||||||||||||||||  |||||||    
T  43540925 attagagaattgatagatgatttagagtaagagaatgatggagaactatgttgttaatgtaacaaaatttct 43540854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 2022994 - 2023064
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||  | | ||||||||||||||||||||    
T  2022994 actcatgcattagagaattgatggatgatttagaataagagaatggtgaagaattatgttgttaatgtaac 2023064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 4555683 - 4555753
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||  |||||||||| |||||| ||||||  | | ||||||||||||||||||||    
T  4555683 actcatgcattagagaattaatggatgatttagagtaatagaatggtgaagaattatgttgttaatgtaac 4555753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 9877713 - 9877643
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  9877713 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 9877643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 39903875 - 39903945
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  39903875 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 39903945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 39908988 - 39909058
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  39908988 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 39909058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 9872598 - 9872528
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    ||||||| |||||||||||| |||||||||| || ||| |||||   | | ||||||||||||||||||||    
T  9872598 actcatgcattagagaattgatggatgatttagaataatagaattgtgaagaattatgttgttaatgtaac 9872528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 25184130 - 25184186
Alignment:
Q  267 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaa 323  Q
    |||||||||||| |||||||||| |||||||||||||  | | || |||||||||||    
T  25184130 attagagaattgatggatgatttagagtaagagaatggtgaagaaatatgttgttaa 25184186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 173396 - 173458
Alignment:
Q  267 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 329  Q
    |||||||||||| |||||||||| |||||||||||| ||| | |||||||||||| |||||||    
T  173396 attagagaattgatggatgatttagagtaagagaattaggaagaattatgttgttgatgtaac 173458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 2193 - 2124
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaa 328  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | |||||||||||||||||||    
T  2193 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaa 2124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 144126 - 144194
Alignment:
Q  259 actcatgaattagagaattggtggatgattttgagt--aagagaatgagggataattatgttgttaatg 325  Q
    ||||||| |||||||||||  |||||||||| |||   |||||||||||||| ||||||||||||||||    
T  144126 actcatgcattagagaattaatggatgatttagagagcaagagaatgagggagaattatgttgttaatg 144194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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