View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_47 (Length: 353)

Name: NF19773_low_47
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_47
NF19773_low_47
[»] chr2 (1 HSPs)
chr2 (14-334)||(11734180-11734500)
[»] chr4 (4 HSPs)
chr4 (25-334)||(38178830-38179139)
chr4 (14-334)||(5530462-5530782)
chr4 (14-334)||(5923020-5923340)
chr4 (14-329)||(5936429-5936744)
[»] chr3 (1 HSPs)
chr3 (14-230)||(53148172-53148388)
[»] chr7 (1 HSPs)
chr7 (14-334)||(34839602-34839922)
[»] chr8 (1 HSPs)
chr8 (14-227)||(40919598-40919811)
[»] chr1 (1 HSPs)
chr1 (9-334)||(45454458-45454783)


Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 334
Target Start/End: Original strand, 11734180 - 11734500
Alignment:
Q  14 catcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcaccagactgaccgaacacaaaattatcaggacg 113  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11734180 catcaagaacagaatcaataagctcagcgccttcggtataatgacctttagcccaattattcccagcaccagactgaccgaacacaaaattatcaggacg 11734279  T
Q  114 aaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttgcttca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11734280 aaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttgcctca 11734379  T
Q  214 ttgtaataaacattgatacgttcaagttgaagttcagagtcgccgttgtattttccggtgtgatcgattccgtgttcgtcgcaaattacttcccagaatt 313  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11734380 ttgtaataaacattgatacgttcaagttgaagttcagaatcgccgttgtattttccggtgtgatcgattccgtgttcgtcgcaaattacttcccagaatt 11734479  T
Q  314 tggcgccgatttggttcccgc 334  Q
    |||||||||||||||||||||    
T  11734480 tggcgccgatttggttcccgc 11734500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 25 - 334
Target Start/End: Original strand, 38178830 - 38179139
Alignment:
Q  25 gaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcaccagactgaccgaacacaaaattatcaggacgaaagatctgac 124  Q
    |||||||| | |||||| |||||||| ||||||||||| ||||||||||| || ||||| ||||||||||| || || ||||| || ||||||||||| |    
T  38178830 gaatcaatcaactcagcgccttcggtgtaatgacctttcgcccaattatttccggcaccggactgaccgaaaacgaagttatccggtcgaaagatctggc 38178929  T
Q  125 caaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttgcttcattgtaataaac 224  Q
    ||||||||||||| | ||  |||||||| || ||||| |||||||||||||| || ||||||||||| || ||||||||||  |||||||||||||| ||    
T  38178930 caaacggaccggaacgaagcgaatccatggttccaggttcaagatccataagcacggcgcgtggaacgtatcttccaccaccagcttcattgtaatagac 38179029  T
Q  225 attgatacgttcaagttgaagttcagagtcgccgttgtattttccggtgtgatcgattccgtgttcgtcgcaaattacttcccagaatttggcgccgatt 324  Q
    ||||||||| ||||| ||||| || || ||||| ||||||| |||||||  ||||||  ||||||||||||| || ||||||||||||||||| |||||     
T  38179030 attgatacgctcaagctgaagatcggaatcgccattgtattgtccggtggaatcgatggcgtgttcgtcgcagataacttcccagaatttggctccgatc 38179129  T
Q  325 tggttcccgc 334  Q
    ||||| ||||    
T  38179130 tggttaccgc 38179139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 5530782 - 5530462
Alignment:
Q  14 catcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcaccagactgaccgaacacaaaattatcaggacg 113  Q
    |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||  |||||| |||||||||||||| || |     
T  5530782 catcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagttattcccagcaccactctgaccaaacacaaaattatccggtct 5530683  T
Q  114 aaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttgcttca 213  Q
    ||||||||||||| |||| || || |  |    |||||||||||| || ||||||||||||||||| || |  |||||| | ||||||||||||||||||    
T  5530682 aaagatctgaccatacggtccagaccggatactatccatagtacccggttcaagatccataagaaccgctctcggaacaaatcttccaccacttgcttca 5530583  T
Q  214 ttgtaataaacattgatacgttcaagttgaagttcagagtcgccgttgtattttccggtgtgatcgattccgtgttcgtcgcaaattacttcccagaatt 313  Q
    |||||||| |||| ||| |||||||||||||| || || || ||| ||||    |||||  |||||||||| |||||  | ||||  |||||||||||||    
T  5530582 ttgtaatacacatcgatccgttcaagttgaagatctgaatcaccggtgtagcggccggttggatcgattccatgttcagcacaaaccacttcccagaatt 5530483  T
Q  314 tggcgccgatttggttcccgc 334  Q
    |||| ||||||||||| ||||    
T  5530482 tggctccgatttggttaccgc 5530462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 334
Target Start/End: Original strand, 5923020 - 5923340
Alignment:
Q  14 catcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcaccagactgaccgaacacaaaattatcaggacg 113  Q
    |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||  |||||| |||||||| ||||| || |     
T  5923020 catcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagttattaccagcaccactctgaccaaacacaaagttatccggtct 5923119  T
Q  114 aaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttgcttca 213  Q
    ||||||||||||  |||| || || |  ||    |||||||| || || ||||||||||||||||  || || |||||| |||  |||| ||| |||||     
T  5923120 aaagatctgaccgtacggtccagaccggacactgtccatagtccccggttcaagatccataagaatcgcacgaggaacaaaccggccacaactagcttcg 5923219  T
Q  214 ttgtaataaacattgatacgttcaagttgaagttcagagtcgccgttgtattttccggtgtgatcgattccgtgttcgtcgcaaattacttcccagaatt 313  Q
    ||||| ||||||||||| || || ||||||||||| |||   ||  ||||   ||||||  | ||||||||||| ||| ||||||  |||||||||||||    
T  5923220 ttgtagtaaacattgattcgctctagttgaagttctgaggtaccactgtaacgtccggtagggtcgattccgtgctcggcgcaaaccacttcccagaatt 5923319  T
Q  314 tggcgccgatttggttcccgc 334  Q
    | || ||||||||||| ||||    
T  5923320 ttgctccgatttggttaccgc 5923340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 329
Target Start/End: Original strand, 5936429 - 5936744
Alignment:
Q  14 catcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcaccagactgaccgaacacaaaattatcaggacg 113  Q
    |||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||| |||||||||  ||| || || ||||| ||||| || |     
T  5936429 catcaagaacagaatcaataagctcagcgccttcagtgtaatgtcctttagcccagttattaccagcaccactctgtccaaagacaaagttatccggtct 5936528  T
Q  114 aaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttgcttca 213  Q
    ||||||||||||  |||| || || |  ||    ||||| || || || ||||||||||||||||| || |  |||||  ||||||||||||||||||||    
T  5936529 aaagatctgaccgtacggtccagaccggacactgtccatcgttcccggttcaagatccataagaaccgctctaggaacgaaccttccaccacttgcttca 5936628  T
Q  214 ttgtaataaacattgatacgttcaagttgaagttcagagtcgccgttgtattttccggtgtgatcgattccgtgttcgtcgcaaattacttcccagaatt 313  Q
    |||||||| |||||||| ||||| | ||| || || || || |||  |||    |||||  |||||||||| |||||  | ||||  |||||||||||||    
T  5936629 ttgtaatacacattgatccgttccaattgcagatctgaatcaccgacgtaacgaccggttggatcgattccatgttcagcacaaaccacttcccagaatt 5936728  T
Q  314 tggcgccgatttggtt 329  Q
    |||| |||||||||||    
T  5936729 tggctccgatttggtt 5936744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 53148172 - 53148388
Alignment:
Q  14 catcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcaccagactgaccgaacacaaaattatcaggacg 113  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||| || || ||||| ||||||||||||||    
T  53148172 catcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacg 53148271  T
Q  114 aaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttgcttca 213  Q
    |||||||| ||| |||||||| ||||| |     |||||||||||||| ||||||||||||||||| || |  ||||||||||||||||||   ||||||    
T  53148272 aaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttca 53148371  T
Q  214 ttgtaataaacattgat 230  Q
    |||||||| ||||||||    
T  53148372 ttgtaatacacattgat 53148388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 34839922 - 34839602
Alignment:
Q  14 catcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcaccagactgaccgaacacaaaattatcaggacg 113  Q
    |||| ||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||| || || || || ||||||||||| || || |||||||||||    
T  34839922 catcgagaactgaatcaataagttcagcgccttcagtgtaatgacctttcgcccaattgttaccggcgccggactgaccgaaaacgaagttatcaggacg 34839823  T
Q  114 aaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttgcttca 213  Q
     |||||||||||  | |||||||  |  ||    ||||| ||||||||||| |  ||||| || || |||||||||||| ||||||| |     |||||     
T  34839822 gaagatctgaccgtaaggaccggtgcggacactgtccatggtaccaggctccaagtccatgaggacggcgcgtggaacaaaccttccgcatgaagcttcg 34839723  T
Q  214 ttgtaataaacattgatacgttcaagttgaagttcagagtcgccgttgtattttccggtgtgatcgattccgtgttcgtcgcaaattacttcccagaatt 313  Q
    ||||| ||||||||||  || |||||||| || || ||||  |||  |||| |||||||  |||| || ||||| |||||||||| ||||||||||||||    
T  34839722 ttgtagtaaacattgacgcgctcaagttgtagatctgagtttccgacgtatcttccggttggatctatgccgtgctcgtcgcaaactacttcccagaatt 34839623  T
Q  314 tggcgccgatttggttcccgc 334  Q
    | |  ||||| ||||||||||    
T  34839622 ttgaaccgatctggttcccgc 34839602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 40919598 - 40919811
Alignment:
Q  14 catcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcaccagactgaccgaacacaaaattatcaggacg 113  Q
    |||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||||||| ||||| |||   || || |||||||| |||||||| |     
T  40919598 catcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaattattaccagctccattttgtccaaacacaaagttatcaggcct 40919697  T
Q  114 aaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttgcttca 213  Q
    ||| || |  ||||| ||||| || |  |     ||||| ||||| || ||||| ||||| |||||||| |  |||||||| ||||||||||||||||||    
T  40919698 aaatatttttccaaatggaccagaacgtaaactgtccatggtacctggttcaaggtccattagaacagctctaggaacatatcttccaccacttgcttca 40919797  T
Q  214 ttgtaataaacatt 227  Q
    ||||| || |||||    
T  40919798 ttgtagtacacatt 40919811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 334
Target Start/End: Original strand, 45454458 - 45454783
Alignment:
Q  9 gacatcatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcaccagactgaccgaacacaaaattatca 108  Q
    |||| ||||||| || |||||||| | |||||| ||||| ||||| |||||||| ||||| || || || ||||| ||||| || || ||||| ||||||    
T  45454458 gacaacatcaagcaccgaatcaatcaactcagctccttctgtatagtgacctttcgcccagttgtttccggcaccggactgtccaaaaacaaagttatca 45454557  T
Q  109 ggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttg 208  Q
    || || || ||||||||  | ||||| ||||| |||  ||||||||| || ||||| |||||||| |||||||| |  |||||  | ||||||| ||| |    
T  45454558 ggccggaaaatctgaccgtatggaccagatctgacgctatccatagtccctggctccagatccatgagaacagctctaggaacgaatcttccacaactcg 45454657  T
Q  209 cttcattgtaataaacattgatacgttcaagttgaagttcagagtcgccgttgtattttccggtgtgatcgattccgtgttcgtcgcaaattacttccca 308  Q
    |||| ||||| || |||||||  ||||| |||||||| ||   ||  || | |||  | |||||    ||||| ||||| ||  |||| |  ||||||||    
T  45454658 cttcgttgtagtacacattgactcgttcgagttgaagatcgttgttcccttggtacctaccggtagagtcgatcccgtgctcagcgcacacaacttccca 45454757  T
Q  309 gaatttggcgccgatttggttcccgc 334  Q
    ||||||||| ||||||||||||||||    
T  45454758 gaatttggctccgatttggttcccgc 45454783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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