View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_49 (Length: 347)
Name: NF19773_low_49
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 53345712 - 53346027
Alignment:
| Q |
1 |
tcaattaaaagtgattatatctgcctctcttcccccttactccagcaacgtagaataattattatggagacaacaataattttttagagttatagacgca |
100 |
Q |
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| T |
53345712 |
tcaattaaaagtgattatatctgtctctcttcccccttactccagcaacgaagattaattattatggagacaacaataattttttagagttatagacgca |
53345811 |
T |
|
| Q |
101 |
aacatagcaaacaatatgattaccggatgtctaaaatgggatggagacatggagtgggttgaattacaaatataggttgaaattttcatcctaccccacc |
200 |
Q |
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| T |
53345812 |
aacatagcaaacagtatgattaccggatgtctaaaatgggatggagacatggagtgggttgaattacaaatataggttgaaattttcatcctaccccacc |
53345911 |
T |
|
| Q |
201 |
cggccacgggttgatccatcggtagcaaaacacaagaaaatatagctaatgcatgataatgaatttaattttactttcagattaaacatcacgtgtagtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53345912 |
cggccacgggttgatccatcggtagcaaaacacaagaaaatatagctaatgcatgataatgaat----------tttcagattaaacatcacgtgtagtc |
53346001 |
T |
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| Q |
301 |
cttacagtgctaaaacctttataatt |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
53346002 |
cttacagtgctaaaacctttataatt |
53346027 |
T |
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