View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_50 (Length: 342)

Name: NF19773_low_50
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_50
NF19773_low_50
[»] chr3 (30 HSPs)
chr3 (1-326)||(22436145-22436470)
chr3 (2-310)||(22357517-22357822)
chr3 (1-326)||(22353326-22353649)
chr3 (8-326)||(22367445-22367763)
chr3 (8-326)||(22430691-22431009)
chr3 (1-326)||(22442256-22442581)
chr3 (1-324)||(22467465-22467785)
chr3 (1-325)||(22635020-22635341)
chr3 (1-323)||(22629957-22630274)
chr3 (32-202)||(22620429-22620599)
chr3 (1-127)||(37930374-37930500)
chr3 (32-232)||(30988838-30989038)
chr3 (8-231)||(22458010-22458233)
chr3 (8-231)||(22480991-22481214)
chr3 (45-225)||(21931161-21931341)
chr3 (32-225)||(22105448-22105641)
chr3 (57-225)||(22656624-22656792)
chr3 (32-225)||(21946364-21946557)
chr3 (32-225)||(22053446-22053639)
chr3 (32-225)||(22115825-22116018)
chr3 (32-225)||(22180157-22180350)
chr3 (32-225)||(22035257-22035450)
chr3 (114-225)||(22028740-22028851)
chr3 (114-225)||(22187728-22187839)
chr3 (79-137)||(37929529-37929587)
chr3 (32-225)||(18966520-18966713)
chr3 (10-253)||(22647695-22647938)
chr3 (79-225)||(22614851-22614997)
chr3 (58-252)||(22628094-22628288)
chr3 (168-225)||(21937893-21937950)
[»] chr1 (4 HSPs)
chr1 (32-225)||(34989957-34990150)
chr1 (32-190)||(2305019-2305177)
chr1 (32-133)||(34976203-34976304)
chr1 (32-133)||(34983314-34983415)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 22436145 - 22436470
Alignment:
Q  1 tttttattcttccatcaatactgattgaatctacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttc 100  Q
    |||||| ||||||||||||||| |||||| |||| |||||||| ||||||| ||  |||||| |||||||||||| | |||  ||||||||||||||| |    
T  22436145 tttttactcttccatcaatacttattgaaactacatgcaccaaacttctattgaccaactctattaaatatccttttgcaatatcttccaatgtccttcc 22436244  T
Q  101 cctgtcttctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacat 200  Q
    ||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||||     
T  22436245 cctctcttctttcacgaacccttcagcaatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatccaaaatacaagaaacac 22436344  T
Q  201 gactttaggtagtaaggcaaatcatggtaactaaatcctagaatttttcttattatggaatattcatttgactgatctgcatttatattttcactaaact 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22436345 gacttgaggtagtaaggcaaatcatggtaactaaatcctagaatttttcttattatggaatattcatttgactgatctgcatttatattttcactaaact 22436444  T
Q  301 tgtaccattcaatcggatttctatct 326  Q
    ||||||||||| | ||||||||||||    
T  22436445 tgtaccattcagtaggatttctatct 22436470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 2 - 310
Target Start/End: Original strand, 22357517 - 22357822
Alignment:
Q  2 ttttattcttccatcaatactgattgaatctacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttcc 101  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||  || ||||||    
T  22357517 ttttactcttccatcaatactgattgaatctacttgcaccaaacttctatgtattaactcttttaaatatccttctgcaacctcttccatcgttctttcc 22357616  T
Q  102 ctgtcttctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatg 201  Q
    |  | || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22357617 ccatattgtttcacaaacccttcagcaatccattgtcgagtcaatgtctttgaatgaactttatagtcttcaggatataatccaaaatacaagaaacatg 22357716  T
Q  202 actttaggtagtaaggcaaatcatggtaactaaatcctagaatttttcttattatggaatattcatttgactgatctgcatttatattttcactaaactt 301  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||   ||||||||||||||||||||||||||    
T  22357717 acttgaggtagtaaggcaaatcatggtaactaaatcctaaaatttttcttattatggaatattcctctaac---tctgcatttatattttcactaaactt 22357813  T
Q  302 gtaccattc 310  Q
     ||||||||    
T  22357814 ataccattc 22357822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 22353326 - 22353649
Alignment:
Q  1 tttttattcttccatcaatactgattgaatctacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttc 100  Q
    |||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |    
T  22353326 tttttactcttccatcaatactgactgaatctacttgcaccaaacttctatggattaactcttttaaatatccttctgcaacctcttccattgtccttcc 22353425  T
Q  101 cctgtcttctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacat 200  Q
    || || ||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||| |||||||||  ||||||||||||||||||||||||||    
T  22353426 cccgtattctttcacaaacccctcagcaatccattgacgagtcaatgtatctgaataaacttcgtagtcttcgagatataatccaaaatacaagaaacat 22353525  T
Q  201 gactttaggtagt-aaggcaaatcatggtaactaaatcctagaatttttcttattatggaatattcatttgactgatctgcatttatattttcactaaac 299  Q
    ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||   ||||||||||||||||||||||||    
T  22353526 gacttgaggtagtaaaggcaaatcatggtaactaaatcctaaaatttttcttattatggaatattcctctaac---tctgcatttatattttcactaaac 22353622  T
Q  300 ttgtaccattcaatcggatttctatct 326  Q
    ||  |||||||||| ||||||||||||    
T  22353623 ttagaccattcaattggatttctatct 22353649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 22367445 - 22367763
Alignment:
Q  8 tcttccatcaatactgattgaatctacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtct 107  Q
    ||||||||||||| ||||   ||||||| ||||||| |||||| |||| |||||| |||||| ||||||| ||||||||||||||||| || |||| |||    
T  22367445 tcttccatcaatagtgatcccatctactcgcaccaaacttctacggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttct 22367544  T
Q  108 tctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgacttta 207  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||| |||| ||  |||||||||||||||||||||| ||||||||||||||||| |    
T  22367545 tctttcacaaacccttcagcaatccattgacgagtcaatatatttgaacgaacatttgagtcttcaggatataatccaaagtacaagaaacatgacttga 22367644  T
Q  208 ggtagtaaggcaaatcatggtaactaaatcctagaatttttcttattatggaatattcatttgactgatctgcatttatattttcactaaacttgtacca 307  Q
    ||| | ||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||  ||||    
T  22367645 ggttgcaaggcaaatcatggtaactaagtcctagaattttttttatcatggaatattcctttgactgatctgcatttatattttcactaaacttagacca 22367744  T
Q  308 ttcaatcggatttctatct 326  Q
    |||||| ||||| ||||||    
T  22367745 ttcaattggattcctatct 22367763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 22430691 - 22431009
Alignment:
Q  8 tcttccatcaatactgattgaatctacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtct 107  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||||||||| |||||||||| || | | |    
T  22430691 tcttccatcaatacttattgaatctacttgcaccaaacttctatggatcaactctattaaatatccttctgcaacctctttcaatgtccttcccgttttt 22430790  T
Q  108 tctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgacttta 207  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||| | ||||||| ||||||||||||||||||||||||||||||||| |    
T  22430791 tctttcacaaacccttcagcaatccattgacaagttaatgtctttgaataaactatatagtctttaggatataatccaaaatacaagaaacatgacttga 22430890  T
Q  208 ggtagtaaggcaaatcatggtaactaaatcctagaatttttcttattatggaatattcatttgactgatctgcatttatattttcactaaacttgtacca 307  Q
    ||| | ||||||||||||||||||||| ||||| | |||||||||| |  | || |||||||| ||||||||||||||||||||||||||||||  ||||    
T  22430891 ggttgcaaggcaaatcatggtaactaagtcctaaagtttttcttatcacaggattttcatttgcctgatctgcatttatattttcactaaacttagacca 22430990  T
Q  308 ttcaatcggatttctatct 326  Q
    |||||| ||||| ||||||    
T  22430991 ttcaattggattcctatct 22431009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 22442256 - 22442581
Alignment:
Q  1 tttttattcttccatcaatactgattgaatctacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttc 100  Q
    |||||| |||||||||||||||| ||||| ||||||||||||| ||||||  ||||||| ||||||||||||||||| |||||| |||||||||||||||    
T  22442256 tttttactcttccatcaatactggttgaaactacttgcaccaaacttctacagattaacacttttaaatatccttctgcaaccttttccaatgtcctttc 22442355  T
Q  101 cctgtcttctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacat 200  Q
    ||  | ||||||||||||||||||||| |||||||||||||||||||||||||||  | |||  |||||||| |||||||||||||||||||||||||||    
T  22442356 cccatattctttcacaaacccttcagctatccattgacgagtcaatgtctttgaacaagcttcatagtcttcgggatataatccaaaatacaagaaacat 22442455  T
Q  201 gactttaggtagtaaggcaaatcatggtaactaaatcctagaatttttcttattatggaatattcatttgactgatctgcatttatattttcactaaact 300  Q
    ||||| |||| | ||||||||||||||||||| | ||||| ||||||||||| |||||||||||| ||  ||||||||||||||||||||||| ||||||    
T  22442456 gacttgaggttgcaaggcaaatcatggtaactgagtcctaaaatttttcttactatggaatattccttaaactgatctgcatttatattttcattaaact 22442555  T
Q  301 tgtaccattcaatcggatttctatct 326  Q
      ||||||||||| | ||||||||||    
T  22442556 cataccattcaattgtatttctatct 22442581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 22467465 - 22467785
Alignment:
Q  1 tttttattcttccatcaatactgattgaatctacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttc 100  Q
    |||||| ||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||| |||||||||||||  |||||||||||||||||||  |    
T  22467465 tttttactcttccatcaatacttattgaaactacttgcaccaaacttctatggatcaactctattaaatatccttcagcaacctcttccaatgtcctccc 22467564  T
Q  101 cctgtcttctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacat 200  Q
    ||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  22467565 cctgtcttccttcacaaacccttcagcaatccattggcgagtcaacgtctttgaatgaactatatagtcttcaggatataatccaaaatacaagaaacat 22467664  T
Q  201 gactttaggtagtaaggcaaatcatggtaactaaatcctagaatttttcttattatggaatattcatttgactgatctgcatttatattttcactaaact 300  Q
    ||||| |||| |||||| |||| ||||||||||||||||| ||||||||||||| |||||||| | | | ||   ||| ||||||||||||||||||| |    
T  22467665 gacttgaggttgtaaggtaaattatggtaactaaatcctaaaatttttcttattgtggaatatccctctaac---tctacatttatattttcactaaatt 22467761  T
Q  301 tgtaccattcaatcggatttctat 324  Q
    |  |||||||||| ||||||||||    
T  22467762 tagaccattcaattggatttctat 22467785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 22635020 - 22635341
Alignment:
Q  1 tttttattcttccatcaatactgattgaatctacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttc 100  Q
    |||||| |||||||||||||||  ||||| ||||||||||||| ||||||||||| ||||||  ||||||||||||| |||||||||| ||||||||| |    
T  22635020 tttttactcttccatcaatactagttgaaactacttgcaccaaacttctatggatcaactctactaaatatccttctgcaacctcttcaaatgtccttcc 22635119  T
Q  101 cctgtcttctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacat 200  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||    
T  22635120 cctgtcttctttcacgaacccttcagcaatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatccaaaatacaagaaacat 22635219  T
Q  201 gactttaggtagtaaggcaaatcatggtaactaaatcctagaatttttcttattatggaatattcatttgactgatctgcatttatattttcactaaact 300  Q
    ||||| |||||| | ||||||||||||||||||| ||||| |||||||||||| ||||||||||| | | ||   |||||||||||||||||||||||||    
T  22635220 gacttgaggtagcatggcaaatcatggtaactaagtcctaaaatttttcttatcatggaatattcctctaac---tctgcatttatattttcactaaact 22635316  T
Q  301 tgtaccattcaatcggatttctatc 325  Q
    |  ||||||| || | |||||||||    
T  22635317 tcgaccattctattgaatttctatc 22635341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 22629957 - 22630274
Alignment:
Q  1 tttttattcttccatcaatactgattgaatctacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttc 100  Q
    |||||| ||||||||  |||||  ||||| ||||||||||||| |||||| |||  |||||| ||||||||||||||||||||||||||||||| ||| |    
T  22629957 tttttactcttccat--atacttgttgaaactacttgcaccaaacttctacggaccaactctattaaatatccttctccaacctcttccaatgttcttcc 22630054  T
Q  101 cctgtcttctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacat 200  Q
    | || |||||||||||||||||||||| |||||||| ||||||||   ||||||| ||||| | |||||||||||||| |||||||||||||||||||||    
T  22630055 cttgacttctttcacaaacccttcagcgatccattggcgagtcaacacctttgaacgaactatatagtcttcaggatagaatccaaaatacaagaaacat 22630154  T
Q  201 gactttaggtagtaaggcaaatcatggtaactaaatcctagaatttttcttattatggaatattcatttgactgatctgcatttatattttcactaaact 300  Q
    ||||| |||| |||||| |||||||||||||||||||||| | ||||||||||| |||||||||| | | ||   ||| |||||||||||||||||||||    
T  22630155 gacttgaggttgtaaggtaaatcatggtaactaaatcctaaattttttcttattgtggaatattcctctaac---tctacatttatattttcactaaact 22630251  T
Q  301 tgtaccattcaatcggatttcta 323  Q
    |  |||||||||| |||||||||    
T  22630252 tagaccattcaattggatttcta 22630274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 22620429 - 22620599
Alignment:
Q  32 tacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatc 131  Q
    |||||||||||| ||||||||||| |||||| |||| ||||||||| |||| |||||||| ||  |  |||| |||||||| |||||||||||||| |||    
T  22620429 tacttgcaccaaacttctatggatcaactctgttaagtatccttctgcaacttcttccaaagtattccccctttcttcttttacaaacccttcagctatc 22620528  T
Q  132 cattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatga 202  Q
    ||||| ||| ||||| ||||||||| |||||| || ||||| |||||||||||||||||||| ||||||||    
T  22620529 cattgccgaatcaatctctttgaatcaactttataatcttctggatataatccaaaatacaataaacatga 22620599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 37930374 - 37930500
Alignment:
Q  1 tttttattcttccatcaatactgattgaatctacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttc 100  Q
    |||||| |||||||||||||| | ||||| ||||||||||||| ||||||  ||||||||||||||||||||||||  |||||| |||||||||||||||    
T  37930374 tttttactcttccatcaataccggttgaaactacttgcaccaaacttctacagattaactcttttaaatatccttccgcaaccttttccaatgtcctttc 37930473  T
Q  101 cctgtcttctttcacaaacccttcagc 127  Q
    |  || |||||||||||||||||||||    
T  37930474 ctcgtattctttcacaaacccttcagc 37930500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 30988838 - 30989038
Alignment:
Q  32 tacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatc 131  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||| |||| |||||||| ||| |  | || || || ||||| ||||||||||| | |    
T  30988838 tacttgcaccaagcttctatggatcaactctgttaaatatccttctgcaacgtcttccaaagtcttccctctttcctccttcacgaacccttcagctacc 30988937  T
Q  132 cattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagtaaggcaaatcatggtaac 231  Q
    ||||| ||| ||||| ||||||| | |||||  || ||||| ||||||| |||||||||||| || |||||||| ||  ||||||||||||||| |||||    
T  30988938 cattgtcgaatcaatctctttgatttaacttcataatcttctggatatattccaaaatacaacaagcatgacttgagagagtaaggcaaatcatcgtaac 30989037  T
Q  232 t 232  Q
    |    
T  30989038 t 30989038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 22458010 - 22458233
Alignment:
Q  8 tcttccatcaatactgattgaatctacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtct 107  Q
    ||||||||||||||| |||||| ||||||||||||| | ||||  ||| || ||| |||||||||| ||| |||| |||||||||||  || || | ||     
T  22458010 tcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttaccatatca 22458109  T
Q  108 tctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgacttta 207  Q
    ||||||||||| |||||||| |||||||| ||| ||| | | |||| | ||||| |  |  ||||||||||||||||||||||||| ||||||||||| |    
T  22458110 tctttcacaaatccttcagccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttga 22458209  T
Q  208 ggtagtaaggcaaatcatggtaac 231  Q
    | | ||||| || |||||||||||    
T  22458210 gattgtaagacagatcatggtaac 22458233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 22480991 - 22481214
Alignment:
Q  8 tcttccatcaatactgattgaatctacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtct 107  Q
    ||||||||||||||| |||||| ||||||||||||| | ||||  ||| || ||| |||||||||| ||| |||| |||||||||||  || || | ||     
T  22480991 tcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttaccatatca 22481090  T
Q  108 tctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgacttta 207  Q
    ||||||||||| |||||||| |||||||| ||| ||| | | |||| | ||||| |  |  ||||||||||||||||||||||||| ||||||||||| |    
T  22481091 tctttcacaaatccttcagccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttga 22481190  T
Q  208 ggtagtaaggcaaatcatggtaac 231  Q
    | | ||||| || |||||||||||    
T  22481191 gattgtaagacagatcatggtaac 22481214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 225
Target Start/End: Complemental strand, 21931341 - 21931161
Alignment:
Q  45 cttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatccattgacgagtca 144  Q
    ||||||||||| |||||| |||||||||||||| | || |||||||| ||| |  || | || || || |||||||||||||| |||||||| |||||||    
T  21931341 cttctatggatcaactctgttaaatatccttctgccacttcttccaaagtcatccccttttcctccttgacaaacccttcagctatccattgtcgagtca 21931242  T
Q  145 atgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagtaaggcaaatcat 225  Q
     | ||||||| | |||||  || ||||| ||||||| ||||||||||||||| |||| ||| || ||||||||||||||||    
T  21931241 ctctctttgatttaacttcataatcttctggatatactccaaaatacaagaagcatggcttgagatagtaaggcaaatcat 21931161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 22105641 - 22105448
Alignment:
Q  32 tacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatc 131  Q
    |||||| ||||  ||||||||||| |||||| |||||||||||||| | || || ||||| ||| |  || | || || ||||||||||||||||| |||    
T  22105641 tacttgaaccaggcttctatggatcaactctgttaaatatccttctgccacttcgtccaaagtcttccccttttcctccttcacaaacccttcagctatc 22105542  T
Q  132 cattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagtaaggcaaatcat 225  Q
    ||||| ||||||| | |||| || | |||||  || ||||| ||||||| |||||| ||||| || |||||||| || ||||||||||||||||    
T  22105541 cattgtcgagtcactctcttcgatttaacttcataatcttctggatatactccaaagtacaacaagcatgacttgagatagtaaggcaaatcat 22105448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 57 - 225
Target Start/End: Original strand, 22656624 - 22656792
Alignment:
Q  57 aactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaat 156  Q
    |||||| |||||||||||||| |||| |||||||| ||  |  |||| |||||||||||||| |||||||| |||||||| ||  ||| | ||||||| |    
T  22656624 aactctgttaaatatccttctgcaacttcttccaaagttttccccctttcttctttcacaaaaccttcagctatccattgccgtatcactctctttgatt 22656723  T
Q  157 gaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagtaaggcaaatcat 225  Q
     |||||  || ||||| ||||||| |||||||||||| ||||||||||| || ||  ||||||||||||    
T  22656724 caacttcataatcttctggatatattccaaaatacaacaaacatgacttaagataaaaaggcaaatcat 22656792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 21946557 - 21946364
Alignment:
Q  32 tacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatc 131  Q
    |||||| ||||  ||||||||||| |||||| |||||||||||||| | || |||||||| ||| |  | || || || ||||||||||||||||| |||    
T  21946557 tacttgaaccaggcttctatggatcaactctgttaaatatccttctgccacttcttccaaagtcttccctctttcctccttcacaaacccttcagctatc 21946458  T
Q  132 cattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagtaaggcaaatcat 225  Q
    ||||| ||| ||| | |||| || | |||||  || ||||| ||||||| ||||||||| || || |||||||| || ||| ||||||||||||    
T  21946457 cattgtcgaatcactctcttcgatttaacttcataatcttctggatatactccaaaataaaacaagcatgacttgagatagcaaggcaaatcat 21946364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 22053639 - 22053446
Alignment:
Q  32 tacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatc 131  Q
    |||||| ||||  ||||||||||| ||||||  ||||||||||||| | || |||||||| ||| |  || | || || |||||||||||||| || |||    
T  22053639 tacttgaaccaggcttctatggatcaactctgataaatatccttctgccacttcttccaaagtcttccccttttcctccttcacaaacccttctgctatc 22053540  T
Q  132 cattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagtaaggcaaatcat 225  Q
    ||||| ||| ||| |  |||||||| |||||  || ||||| ||||||| |||||||||||| || |||||||  || ||||||||||||||||    
T  22053539 cattgtcgaatcactcgctttgaattaacttcataatcttctggatatactccaaaatacaacaagcatgactcgagatagtaaggcaaatcat 22053446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 22116018 - 22115825
Alignment:
Q  32 tacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatc 131  Q
    |||||| ||||  ||||||||||| |||||| ||| |||||| ||| | || || ||||  ||| || |||| || || ||||||||||||||||| |||    
T  22116018 tacttgaaccatacttctatggatcaactctgttatatatccctctgccacttcatccatagtctttcccctttcctccttcacaaacccttcagctatc 22115919  T
Q  132 cattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagtaaggcaaatcat 225  Q
    ||||| ||||| | | ||||||| | |||||   | ||||| || |||| |||||||||||| ||||||||||| || ||||||||||||||||    
T  22115918 cattgtcgagtgattctctttgatttaacttcaaaatcttctgggtatactccaaaatacaacaaacatgacttgagatagtaaggcaaatcat 22115825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 22180350 - 22180157
Alignment:
Q  32 tacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatc 131  Q
    |||||| ||||  ||||||||||| |||||| ||| |||||| ||| | || ||||||| |||  || || | || || ||||||||||||||||| |||    
T  22180350 tacttgaaccaggcttctatggatcaactctgttagatatccctctgccacttcttccattgtttttcccttttcctccttcacaaacccttcagctatc 22180251  T
Q  132 cattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagtaaggcaaatcat 225  Q
    ||||  ||||| | | |||| || | |||||  || || || ||||||| |||||||||||| ||||||||||| || ||||||||||||||||    
T  22180250 cattttcgagttactctcttcgatttaacttcataatcctctggatatactccaaaatacaacaaacatgacttgagatagtaaggcaaatcat 22180157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 22035450 - 22035257
Alignment:
Q  32 tacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatc 131  Q
    |||||| ||||  ||||||||||| |||||| ||| |||||| ||  | |  ||||||| |||| || || | || || |||| |||||||||||| |||    
T  22035450 tacttgaaccaggcttctatggatcaactctattagatatccctcagccagttcttccattgtctttcccttttcctccttcataaacccttcagctatc 22035351  T
Q  132 cattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagtaaggcaaatcat 225  Q
    ||||| ||||||| | ||||||| | |||||   | ||||| ||||||| |||||||||||| || |||| ||| || ||||||||||||||||    
T  22035350 cattgtcgagtcactctctttgatttaacttcaaaatcttctggatatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcat 22035257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 22028851 - 22028740
Alignment:
Q  114 acaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagt 213  Q
    |||||||||||||| |||||||| ||| ||| | ||||||| | |||||  || ||||| ||||||| |||||||||||| || |||| ||| || ||||    
T  22028851 acaaacccttcagctatccattgtcgaatcactctctttgatttaacttcataatcttctggatatactccaaaatacaacaagcatggcttgagatagt 22028752  T
Q  214 aaggcaaatcat 225  Q
    ||||||||||||    
T  22028751 aaggcaaatcat 22028740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 22187839 - 22187728
Alignment:
Q  114 acaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagt 213  Q
    |||||||||||||| |||||||| ||| ||| | ||||||| | |||||  || ||||| ||||||| |||||||||||| || |||| ||| || ||||    
T  22187839 acaaacccttcagctatccattgtcgaatcactctctttgatttaacttcataatcttctggatatactccaaaatacaacaagcatggcttgagatagt 22187740  T
Q  214 aaggcaaatcat 225  Q
    ||||||||||||    
T  22187739 aaggcaaatcat 22187728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 37929587 - 37929529
Alignment:
Q  79 caacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatccattga 137  Q
    |||||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||    
T  37929587 caaccttttccaatgtcctttccccgtattctttcacaaacccttcagctatccattga 37929529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 225
Target Start/End: Original strand, 18966520 - 18966713
Alignment:
Q  32 tacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatc 131  Q
    |||||||||||| |||||||||||||||||| |||   |||||||| |||  |||||||| ||| |  | || || || ||||||||||||||||| |||    
T  18966520 tacttgcaccaagcttctatggattaactctattaggaatccttctgcaatttcttccaaagtcttcccgctttcctccttcacaaacccttcagctatc 18966619  T
Q  132 cattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagtaaggcaaatcat 225  Q
    ||||| ||| | | |  |||| ||| || ||  || ||||  ||| ||| |||||||||| | || |||||||| || ||||||||||||||||    
T  18966620 cattgtcgaattactcgctttaaattaatttcataatcttatggacatactccaaaatactacaagcatgacttgagatagtaaggcaaatcat 18966713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 22647695 - 22647938
Alignment:
Q  10 ttccatcaatactgattgaatctacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttc 109  Q
    |||||||||| || | ||||  |||||| ||||| ||||||||||| |||||  ||||||||| |||| |||| |||||||| ||     |||| |||||    
T  22647695 ttccatcaattctaactgaagatacttgaaccaaacttctatggatcaactcagttaaatatcgttctgcaacttcttccaaggtataccccctttcttc 22647794  T
Q  110 tttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttagg 209  Q
    ||||||||| |||||||| | ||| || |||  || | || | ||   |||||  || ||||| ||||| | ||||||||| ||||||||||  || ||     
T  22647795 tttcacaaatccttcagctacccactgtcgaaacagtctcctcgatccaacttcataatcttcgggatacattccaaaatataagaaacatggtttaaga 22647894  T
Q  210 tagtaaggcaaatcatggtaactaaatcctagaatttttcttat 253  Q
    ||| |||||||||||| ||| || ||||||| |||||| |||||    
T  22647895 tagaaaggcaaatcattgtagctgaatcctaaaattttgcttat 22647938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 22614851 - 22614997
Alignment:
Q  79 caacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatgaactttgtagtcttcaggata 178  Q
    |||| ||||| |||||| |  |||| || |||||||||||||||||||| ||||| ||||||   | | |||| || | || ||  |||||||| || ||    
T  22614851 caacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactgacgaagtagtatcttagattcaatttcatagtcttctgggta 22614950  T
Q  179 taatccaaaatacaagaaacatgactttaggtagtaaggcaaatcat 225  Q
    ||||||||||||||| ||||||||  | || ||||||||||||||||    
T  22614951 taatccaaaatacaacaaacatgatctaagatagtaaggcaaatcat 22614997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 252
Target Start/End: Original strand, 22628094 - 22628288
Alignment:
Q  58 actcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatccattgacgagtcaatgtctttgaatg 157  Q
    ||||| ||||||||||||||   || ||||| || ||  || |||| |||||||||||||| |||||||| ||| |||| ||| ||||| ||||||| |     
T  22628094 actctgttaaatatccttctgtgacttcttcgaaagtttttcccctttcttctttcacaaatccttcagctatcaattgtcgaatcaatctctttgattc 22628193  T
Q  158 aactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagtaaggcaaatcatggtaactaaatcctagaatttttctta 252  Q
    ||| |  || | ||| ||||||| |||||||||| | | |||||| || || ||  |||||| ||||| ||| ||||| |||| || ||||||||    
T  22628194 aacctcataatattctggatatagtccaaaatacgacacacatgatttaagataaaaaggcatatcattgtagctaaaacctaaaacttttctta 22628288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 21937950 - 21937893
Alignment:
Q  168 tcttcaggatataatccaaaatacaagaaacatgactttaggtagtaaggcaaatcat 225  Q
    ||||| ||||||| |||||||||||| || |||||||| || ||||||||||||||||    
T  21937950 tcttctggatatactccaaaatacaacaagcatgacttgagatagtaaggcaaatcat 21937893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 34990150 - 34989957
Alignment:
Q  32 tacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatc 131  Q
    |||||||||||| |||||| | || |||||| ||||||||| |||| |||| |||||||| ||| |  | || || |||||||||||||||||||| |||    
T  34990150 tacttgcaccaaacttctacgaatcaactctgttaaatatctttcttcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatc 34990051  T
Q  132 cattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaatacaagaaacatgactttaggtagtaaggcaaatcat 225  Q
    |||||  |  ||| | ||||||| | |||||  || ||||| ||||| | ||||||||| || |||||||| || || ||  ||||||||||||    
T  34990050 cattgttgtatcattctctttgatttaacttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcat 34989957  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 2305019 - 2305177
Alignment:
Q  32 tacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatc 131  Q
    |||||||||||| |||| | | || ||||||  ||||||||||||| |||| |||||||| ||| |  | || || || ||||||||||||||||| |||    
T  2305019 tacttgcaccaaacttcgacgaatcaactctgataaatatccttctgcaacttcttccaaagtcttcccactttcctccttcacaaacccttcagctatc 2305118  T
Q  132 cattgacgagtcaatgtctttgaatgaactttgtagtcttcaggatataatccaaaata 190  Q
    || || ||| ||| | ||||||| | |||||  || ||||| ||||| | |||||||||    
T  2305119 cactgtcgaatcactctctttgatttaacttcataatcttctggatacattccaaaata 2305177  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 34976304 - 34976203
Alignment:
Q  32 tacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatc 131  Q
    |||||||||||| |||| | | || |||||| |||||||||||| | |||| |||||||| ||| |  | || || || ||||||||||||||||| |||    
T  34976304 tacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaaagtcttgccactttcctccttcacaaacccttcagctatc 34976205  T
Q  132 ca 133  Q
    ||    
T  34976204 ca 34976203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 34983415 - 34983314
Alignment:
Q  32 tacttgcaccaatcttctatggattaactcttttaaatatccttctccaacctcttccaatgtcctttccctgtcttctttcacaaacccttcagcaatc 131  Q
    |||||||||||| |||| | | || |||||| |||||||||||| | |||| |||||||| ||| |  | || || || ||||||||||||||||| |||    
T  34983415 tacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaaagtcttgccactttcctccttcacaaacccttcagctatc 34983316  T
Q  132 ca 133  Q
    ||    
T  34983315 ca 34983314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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