View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_53 (Length: 333)
Name: NF19773_low_53
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 24 - 331
Target Start/End: Complemental strand, 38568826 - 38568519
Alignment:
| Q |
24 |
taaattaattacaggtttctttgaaatatgtatatttggcagtaggatctggggtggcagcatttcttcgtaagtataatatatttgtattaattaagat |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38568826 |
taaattaattacaggtttctttgaaatatgtatatttggcagtaggatctggggtggcagcatttcttcgtaagtataatatatttgtattaattaagat |
38568727 |
T |
|
| Q |
124 |
gatgaannnnnnngtatatgaagaaaagacactaaacttgtgagaaattgtttttgtattttcagaggcgagttgttggatggttacaggagaaagacaa |
223 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38568726 |
gatgaatttttttgtatatgaagaaaagacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttggatggttacaggagaaagacaa |
38568627 |
T |
|
| Q |
224 |
gctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacagacacaggagaagttgtaggaagaatgt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
38568626 |
gctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaaacacaggagaagttatagggagaatgt |
38568527 |
T |
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| Q |
324 |
ctggtgat |
331 |
Q |
| |
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| |||||| |
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| T |
38568526 |
caggtgat |
38568519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 25 - 331
Target Start/End: Complemental strand, 38527522 - 38527218
Alignment:
| Q |
25 |
aaattaattacaggtttctttgaaatatgtatatttggcagtaggatctggggtggcagcatttcttcgtaagtataatatatttgta-ttaatt-aaga |
122 |
Q |
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||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||| |||| |
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| T |
38527522 |
aaattgattacaggtgtctttgaaatttgtatatttggcagtaggatctggggtggcagcatttctccgtaagtatagtat-tttgtaattaatttaaga |
38527424 |
T |
|
| Q |
123 |
tgatgaannnnnnngtatatgaagaaaagacactaaacttgtgagaaattgtttttgtattttcagaggcgagttgttggatggttacaggagaaagaca |
222 |
Q |
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| T |
38527423 |
tgatgaatttttttgtatatgaagaaaagacactaaacttatgataa-ttgttt--gtattttcagaggtgagttgttggatggtaacaggagaaagaca |
38527327 |
T |
|
| Q |
223 |
agctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacagacacaggagaagttgtaggaagaatg |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38527326 |
agctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaaacacaggagaagttgtaggaagaatg |
38527227 |
T |
|
| Q |
323 |
tctggtgat |
331 |
Q |
| |
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||||||||| |
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| T |
38527226 |
tctggtgat |
38527218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 330
Target Start/End: Complemental strand, 5833701 - 5833568
Alignment:
| Q |
197 |
tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacag |
296 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| || | | ||||| |||||||| |||||| ||| ||| || | |||||||||| |||||| |
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| T |
5833701 |
tgttggatggtaacaggagaaagacaagctgcaaggattcgtagcttgtacttgaaaaccatattacaacaggatattgcattctttgatactgaaacaa |
5833602 |
T |
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| Q |
297 |
acacaggagaagttgtaggaagaatgtctggtga |
330 |
Q |
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| T |
5833601 |
acacaggagaggtaattggtagaatgtctggtga |
5833568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 330
Target Start/End: Original strand, 5764127 - 5764260
Alignment:
| Q |
197 |
tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacag |
296 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||| || | | ||||| |||||||| ||||||| || ||| || | |||||||| | |||||| |
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| T |
5764127 |
tgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccatattaaagcaggatattgcattctttgacactgaaacaa |
5764226 |
T |
|
| Q |
297 |
acacaggagaagttgtaggaagaatgtctggtga |
330 |
Q |
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||||||||||||| | || |||||||||||||| |
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| T |
5764227 |
acacaggagaagtaattggtagaatgtctggtga |
5764260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 5821051 - 5821085
Alignment:
| Q |
197 |
tgttggatggttacaggagaaagacaagctgcaag |
231 |
Q |
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| T |
5821051 |
tgttggatggtgacaggagaaagacaagctgcaag |
5821085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 51144316 - 51144421
Alignment:
| Q |
226 |
tgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacagacacaggagaagttgtaggaagaatgtct |
325 |
Q |
| |
|
||||||||| ||||| || ||| | |||||||| || || |||||||| | |||||||||||| ||||| | || ||||| ||||| ||||||||||| |
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| T |
51144316 |
tgcaagaattagagggttatatcttaaaacaattttgaggcaagatgtgagtttctttgataaggaaactaatacgggagaggttgttggaagaatgtca |
51144415 |
T |
|
| Q |
326 |
ggtgat |
331 |
Q |
| |
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|||||| |
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| T |
51144416 |
ggtgat |
51144421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 331
Target Start/End: Original strand, 51197997 - 51198076
Alignment:
| Q |
252 |
aaacaatattaagacaagatgttactttctttgataaagaaacagacacaggagaagttgtaggaagaatgtctggtgat |
331 |
Q |
| |
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||||||| || || |||||||| | |||||||||||| ||||| | || ||||| ||||| |||||||||||||||||| |
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| T |
51197997 |
aaacaattttgaggcaagatgtgagtttctttgataaggaaactaatactggagaggttgttggaagaatgtctggtgat |
51198076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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