View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_54 (Length: 328)
Name: NF19773_low_54
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 1503543 - 1503343
Alignment:
| Q |
14 |
aggtcatggtaatccgaagttcgatcataaagtaagtataacatggcaaaaaattgttgtactagagaatcaaagttggattctcctaaacgattcgtcc |
113 |
Q |
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| T |
1503543 |
aggtcatggtaatccggagttcgatcataaagta----taacatggcaaaaaattgttgcactaaagaattaaagttgaattctcctaaacgattcgtcc |
1503448 |
T |
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| Q |
114 |
tttgaaagaaagnnnnnnnnnntgcacattataactccaacccaacacctttaaagnnnnnnntacaatgagttctataaaccagttacaactcgtcagt |
213 |
Q |
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| T |
1503447 |
tttgaaaaaaa-------aaaaagtacattataacttcaacccaacacctttaaagaaaaaaatacaacgagttctataaaccagttacaactcgtcagt |
1503355 |
T |
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| Q |
214 |
actaaattatca |
225 |
Q |
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|||||||||||| |
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| T |
1503354 |
actaaattatca |
1503343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 1483899 - 1483805
Alignment:
| Q |
217 |
aaattatcatagtgagagagggtacctcttattatgttgacagatttatggttggtggagatagaagttgatctgaaattgaaggatcacttgcc |
311 |
Q |
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| T |
1483899 |
aaattatcataatgagagagggtacctcttattatgttgacagatttatggttggtgaagatagaagttgatctgaaattgaaggatcacttgcc |
1483805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 38628305 - 38628273
Alignment:
| Q |
23 |
taatccgaagttcgatcataaagtaagtataac |
55 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
38628305 |
taatccaaagttcgatcataaagtaagtataac |
38628273 |
T |
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