View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_55 (Length: 321)
Name: NF19773_low_55
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 56 - 304
Target Start/End: Complemental strand, 43805105 - 43804864
Alignment:
| Q |
56 |
atgcatttcagtatatggtcaccttaacaaggttatgagcaaccatattagtttctctcctaactaaaagttgttataaaacaatgataaaatactacaa |
155 |
Q |
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| T |
43805105 |
atgcatttcagtatatggtcaccttaacaaggttatgagcaaccatattagtttctctcctaactaaaagttgttatagaacgatgataaaatactaca- |
43805007 |
T |
|
| Q |
156 |
catctacttaaaatgcaacctatttcgattctatcatttgactaacaagttaaaacgttcacaacagtctttgaatctaaagtaaagataactggtttga |
255 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43805006 |
--tctacttaaaatgcaacctatctcgattctatcatttgactaacaagttaaaacgttcacaacagtctttgaatctaaagtaaagataactggtttga |
43804909 |
T |
|
| Q |
256 |
actctaatttttgtatccactcgatagctgccaataagacggaagcctc |
304 |
Q |
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| T |
43804908 |
actctaatttttgtatccac----tagctgccaataagacggaagcctc |
43804864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 264
Target Start/End: Complemental strand, 45039306 - 45039197
Alignment:
| Q |
155 |
acatctacttaaaatgcaacctatttcgattctatcatttgactaacaagttaaaac-gttcacaacagtctttgaatctaaagtaaagataactggttt |
253 |
Q |
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| T |
45039306 |
acatctacttaaaatggaacctacctctattctattatt-gactcataggttaaaagagttcacagcactctttgaatcaagagtaaaaataacttgttt |
45039208 |
T |
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| Q |
254 |
gaactctaatt |
264 |
Q |
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| T |
45039207 |
gaactctaatt |
45039197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 12158761 - 12158712
Alignment:
| Q |
215 |
cacaacagtctttgaatctaaagtaaagataactggtttgaactctaatt |
264 |
Q |
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| T |
12158761 |
cacaacactctttgaatctaaagtaaagataactttgttgaactctaatt |
12158712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 2442074 - 2442016
Alignment:
| Q |
223 |
tctttgaatctaaagtaaagataactggtttgaactctaatttttgtatccactcgata |
281 |
Q |
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|||| ||||||| | ||||||||||| | ||||||||||||||||| | |||||||||| |
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| T |
2442074 |
tcttagaatctagaataaagataacttgcttgaactctaatttttgcacccactcgata |
2442016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 2634013 - 2634055
Alignment:
| Q |
76 |
accttaacaaggttatgagcaaccatattagtttctctcctaa |
118 |
Q |
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| T |
2634013 |
accttaacaaggttacgagcaaccatattaatctctctcctaa |
2634055 |
T |
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