View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_56 (Length: 313)
Name: NF19773_low_56
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 32386389 - 32386106
Alignment:
| Q |
9 |
gattatactgatgaatttaatgtcctttaaaagttcatattttcgggggaggcagggtagagttgggaaggatttggtattatcgtttgaaaagtaatgc |
108 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32386389 |
gattttactgatgaatttaatgtcctttaaa-gttcatattttcgggggaggcagggtagagttgggaaggatttggtattatcgtttgaaaagtaatgc |
32386291 |
T |
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| Q |
109 |
atgaaatgatctctatccattttattagtaagtagttgcagaataagtactacgtttttggtgtacttctacagcttgtcagatgacaaatttttataaa |
208 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32386290 |
atgaaatgatctctatccatttta---gtaagtagttgcagaatcagtaatacatttttggtgtacttctacagcttgtcagatgacaaatttttataaa |
32386194 |
T |
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| Q |
209 |
gctttttatttacctatttggagtgtggtgttcttgtgagtgtttttggtgattgaacttaatggggttattttgatgtttcattatg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32386193 |
gctttttatttacctatttggagtgtggtgttcttgtgagtgtttttggtgattgaacataatggggttattttgatgtttcattatg |
32386106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 32440345 - 32440062
Alignment:
| Q |
9 |
gattatactgatgaatttaatgtcctttaaaagttcatattttcgggggaggcagggtagagttgggaaggatttggtattatcgtttgaaaagtaatgc |
108 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32440345 |
gattttactgatgaatttaatgtcctttaaa-gttcatattttcgggggaggcagggtagagttgggaaggatttggtattatcgtttgaaaagtaatgc |
32440247 |
T |
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| Q |
109 |
atgaaatgatctctatccattttattagtaagtagttgcagaataagtactacgtttttggtgtacttctacagcttgtcagatgacaaatttttataaa |
208 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32440246 |
atgaaatgatctctatccatttta---gtaagtagttgcagaatcagtaatacatttttggtgtacttctacagcttgtcagatgacaaatttttataaa |
32440150 |
T |
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| Q |
209 |
gctttttatttacctatttggagtgtggtgttcttgtgagtgtttttggtgattgaacttaatggggttattttgatgtttcattatg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32440149 |
gctttttatttacctatttggagtgtggtgttcttgtgagtgtttttggtgattgaacataatggggttattttgatgtttcattatg |
32440062 |
T |
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