View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_6 (Length: 599)
Name: NF19773_low_6
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_6 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 19 - 588
Target Start/End: Original strand, 117537 - 118106
Alignment:
| Q |
19 |
tgtaaaaccatcaaccatgaattggtgtaataatctcctacagcaaaggagagttctagcctctccatttctgctttgaatcctgaatgagaaccattct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
117537 |
tgtaaaaccatcaaccatgaattggtgtaataatctcctacaacaaaggagagttctagcctctccatttctgctttgaatcctgaatgagaaccattct |
117636 |
T |
|
| Q |
119 |
tttatagtgagacgatttttcttggtgactttcacctcagctctgtatttatgcaatataccatctctgtaaccatcttcaccataggggaatattagtg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
117637 |
tttatagtgagacgatttttcttggtgactttcacctcagctctgtatttatgcaatataccatctctgtaaccatcttcaccataggggaatattagtg |
117736 |
T |
|
| Q |
219 |
gatattggtaactcaaataagcagcgtggaactcatcaattctctggagttgaccattagtttggtgcagaatgatatctcttttatcggccgcatcaac |
318 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
117737 |
gatattggtacctcaaataagcagcgtggaactcatcaattctctggagttgaccattagtttggtgcagaatgatatctcttttatcggccgcatcaac |
117836 |
T |
|
| Q |
319 |
atcacctactatgaaagcagcaacttctgatactgtcggttcattgtaaatccttccatcagatttcctttctgatataagtttgattttcaaatcatga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
117837 |
atcacctactatgaaagcagcaacttctgatactgtcggttcattgtaaatccttccatcagatttcctttctgatataagtttgattttcaaatcatga |
117936 |
T |
|
| Q |
419 |
atatgtcctccttttaaaatatcacgtgccatcctgaatgactttgcatgaacattaaattcatccaacattttgcacaattgtacaacaatgtcttgag |
518 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
117937 |
atgtgtcctccttttaaaatatcacgtgccatcctgaatgactttgcatgaacattaaattcatctagcattttgcacaattgtacaacaatgtcttgag |
118036 |
T |
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| Q |
519 |
aaatatttttggtgttcctgtccaacagtataagttataattaatatgattatagatgaaatgatgatgt |
588 |
Q |
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| T |
118037 |
aaatatttttggtgttcttgtccaacagtataaattataattaatatgattatagatgaaatgattatgt |
118106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 19 - 539
Target Start/End: Original strand, 22071455 - 22071977
Alignment:
| Q |
19 |
tgtaaaaccatcaaccatgaattggtgtaataatctcctacagcaaaggagagttctagcctctccatttctgctttgaatcctgaatgagaaccattct |
118 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||| || |||||||| | ||||||||| || ||||||||||| | |||||| ||||| ||| |
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| T |
22071455 |
tgtaaaaccatcaaccatgaattggtgtaacaatctcctactacacaggagagtccgagcctctcctttcctgctttgaatgcggaatgaaaaccactct |
22071554 |
T |
|
| Q |
119 |
tttatagtgagacgatttttcttg--gtgactttcacctcagctctgtatttatgcaatataccatctctgtaaccatcttcaccataggggaatattag |
216 |
Q |
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|||||| ||||||||||||| || |||||| |||| |||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| || | |
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| T |
22071555 |
tttataatgagacgatttttttttttgtgactatcacttcagctctatacttatgcaatataccatctctataaccatcttcaccataagggaaaatcaa |
22071654 |
T |
|
| Q |
217 |
tggatattggtaactcaaataagcagcgtggaactcatcaattctctggagttgaccattagtttggtgcagaatgatatctcttttatcggccgcatca |
316 |
Q |
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||||| |||||||| ||||| ||||| || || |||||||| | ||||| |||||||||||||| |||| ||||||||||||||||||||| | |||| |
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| T |
22071655 |
gggatactggtaacttaaatatgcagcatgaaattcatcaatcatttggagctgaccattagtttgatgcaaaatgatatctcttttatcggcagtatca |
22071754 |
T |
|
| Q |
317 |
acatcacctactatgaaagcagcaacttctgatactgtcggttcattgtaaatccttccatcagatttcctttctgatataagtttgattttcaaatcat |
416 |
Q |
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||||||||||||||||||||||||||||| || || || ||||||||||||||||| |||||||||| ||||| ||||||||| | | ||||||||||| |
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| T |
22071755 |
acatcacctactatgaaagcagcaacttcggagaccgtaggttcattgtaaatcctatcatcagatttactttccgatataagtcttaatttcaaatcat |
22071854 |
T |
|
| Q |
417 |
gaatatgtcctccttttaaaatatcacgtgccatcctgaatgactttgcatgaacattaaattcatccaacattttgcacaattgtacaacaatgtcttg |
516 |
Q |
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|| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
22071855 |
tcatgtgtcctccctttaagatatcacgtgccatcctgaaagactttgcatgaacattatgctcatccaacattttgcacaatcgtacaacaatgtcttc |
22071954 |
T |
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| Q |
517 |
agaaatatttttggtgttcctgt |
539 |
Q |
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||| ||||||||||| ||||||| |
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| T |
22071955 |
agatatatttttggtattcctgt |
22071977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 26224021 - 26223955
Alignment:
| Q |
314 |
tcaacatcacctactatgaaagcagcaacttctgatactgtcggttcattgtaaatccttccatcag |
380 |
Q |
| |
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||||||||||||||||| ||||| || ||||| || || || |||| ||| |||||||||||||||| |
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| T |
26224021 |
tcaacatcacctactatcaaagctgctacttcggagacagtaggttgattataaatccttccatcag |
26223955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 33543585 - 33543519
Alignment:
| Q |
314 |
tcaacatcacctactatgaaagcagcaacttctgatactgtcggttcattgtaaatccttccatcag |
380 |
Q |
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||||||||||||||||| ||||| || ||||| || || || |||| ||| |||||||||||||||| |
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| T |
33543585 |
tcaacatcacctactatcaaagctgctacttcagagacagtaggttgattataaatccttccatcag |
33543519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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