View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_60 (Length: 305)

Name: NF19773_low_60
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_60
NF19773_low_60
[»] chr6 (5 HSPs)
chr6 (11-290)||(28715875-28716154)
chr6 (111-290)||(22021438-22021612)
chr6 (111-290)||(22010016-22010176)
chr6 (77-109)||(22009740-22009772)
chr6 (77-109)||(22055840-22055872)
[»] chr4 (13 HSPs)
chr4 (113-290)||(4938408-4938579)
chr4 (111-270)||(4916942-4917094)
chr4 (145-265)||(4930203-4930325)
chr4 (220-262)||(4950964-4951006)
chr4 (77-109)||(4916694-4916726)
chr4 (77-109)||(4930090-4930122)
chr4 (77-109)||(4985049-4985081)
chr4 (78-109)||(4975356-4975387)
chr4 (220-265)||(4961220-4961264)
chr4 (220-265)||(5030493-5030537)
chr4 (231-260)||(5060142-5060171)
chr4 (77-109)||(4938353-4938385)
chr4 (77-109)||(4950739-4950771)
[»] chr2 (4 HSPs)
chr2 (111-290)||(44331546-44331720)
chr2 (111-290)||(44310298-44310458)
chr2 (77-109)||(44310022-44310054)
chr2 (77-109)||(44366225-44366257)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 28715875 - 28716154
Alignment:
Q  11 gaagaaaatcattgtgttcctcatgtgtgcagttaatccgtggtgactaaaaaccaagnnnnnnnncatgtattttatcaagaaattaaggtatatatag 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  28715875 gaagaaaatcattgtgttcctcatgtgtgcaggtaatccgtggtgactaaaaaccaagaaaaaaaacatgtattttatcaagaaattaaggtatatatag 28715974  T
Q  111 atatgtaaacgtaacttgaaacaagttgatcattatcttcttaaacatgatttgtcttgttggtgcagaaacttaccatgtgcatgaacctcacgctcaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28715975 atatgtaaacgtaacttgaaacaagttgatcattatcttcttaaacatgatttgtcttgttggtgcagaaacttaccatgtgcatgaacctcacgctcaa 28716074  T
Q  211 gtgtggagctggagctgcctttgggcatgggtggaattggaaaataggtaatgaattttgttttttacttcctctttctt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28716075 gtgtggagctggagctgcctttgggcatgggtggaattggaaaataggtaatgaattttgttttttacttcctctttctt 28716154  T

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Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 111 - 290
Target Start/End: Original strand, 22021438 - 22021612
Alignment:
Q  111 atatgtaaacgtaacttgaaacaagttgatcattatcttcttaaacatgatttgtcttgttggtgcagaaacttaccatgtgcatgaacctcacgct-ca 209  Q
    |||||||||| ||| |||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| | |  |    
T  22021438 atatgtaaacataagttgaaacaagttaattattatcttcttaaacgtgatttgtcttgttggtgcagaaactcaccatgtgcatgaatctcatgttgga 22021537  T
Q  210 agtgtggagctggagctgcctttgggcatgggtggaattggaaaataggtaatgaattttgttttttacttcctctttctt 290  Q
    ||||      ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22021538 agtg------tggagctgcttttgggcatgggtggaattggaaaataggtaataaattttgttttttacttcctctttctt 22021612  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 290
Target Start/End: Original strand, 22010016 - 22010176
Alignment:
Q  111 atatgtaaacgtaacttgaaacaagttgatcattatcttcttaaacatgatttgtcttgttggtgcagaaacttaccatgtgcatgaacctcacgctcaa 210  Q
    |||||||||| |||  ||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||||  |||||||                
T  22010016 atatgtaaacataagctgaaacaagttaattattatcttcttaaacgtgatttgtcttgttggtgcagaaactcaccattcgcatgaa------------ 22010103  T
Q  211 gtgtggagctggagctgcctttgggcatgggtggaattggaaaataggtaatgaattttgttttttacttcctctttctt 290  Q
      ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22010104 --gtgg-----gagctgcctttgggcatgggtggaattggaaaataggtaatgaattttgttttttacttcctttttctt 22010176  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 22009740 - 22009772
Alignment:
Q  77 catgtattttatcaagaaattaaggtatatata 109  Q
    |||||||||||||||||||||||||||| ||||    
T  22009740 catgtattttatcaagaaattaaggtatgtata 22009772  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 22055840 - 22055872
Alignment:
Q  77 catgtattttatcaagaaattaaggtatatata 109  Q
    |||||||||||||||||||||||||| ||||||    
T  22055840 catgtattttatcaagaaattaaggtgtatata 22055872  T

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Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 113 - 290
Target Start/End: Original strand, 4938408 - 4938579
Alignment:
Q  113 atgtaaacgtaacttgaaacaagttgatcattatcttcttaaacatgatttgtcttgttggtgcagaaacttaccatgtgcatgaacctcacgctcaagt 212  Q
    ||||||| |||| |||||||||||| || |||||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||    
T  4938408 atgtaaatgtaagttgaaacaagttaattattatcttgttaaacgtgatttgtcttgtgggtgcagaaactcaccatgtgcatgaacctcacggtgaagt 4938507  T
Q  213 gtggagctggagctgcctttgggcatgggtggaattggaaaataggtaatgaattttgttttttacttcctctttctt 290  Q
    |      ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4938508 g------tggagttgcctttgggcatgggtggaattggaaaataggtaatgaattttgtttcttacttcctctttctt 4938579  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 111 - 270
Target Start/End: Original strand, 4916942 - 4917094
Alignment:
Q  111 atatgtaaacgtaacttgaaacaagttgatcattatcttcttaaacatgatttgtcttgttggtgcagaaacttaccatgtgcatgaacctcacgctcaa 210  Q
    |||||| || |||| ||||| |||||| || ||||| |||| |||||||||||||||||| |||||||||||| ||| || |||||||||||||||| ||    
T  4916942 atatgtgaatgtaagttgaagcaagttaattattattttct-aaacatgatttgtcttgtgggtgcagaaactcaccttgagcatgaacctcacgctaaa 4917040  T
Q  211 gtgtggagctggagctgcctttgggcatgggtggaattggaaaataggtaatgaattttg 270  Q
    |||      |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4917041 gtg------tggagctgcctttgggcatgggtggaattggaaaataggtaatgaattttg 4917094  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 4930203 - 4930325
Alignment:
Q  145 atcttcttaaacatgatttgtcttgttggtgcagaaacttaccatgtgcatgaacctcacgctcaagtg-tggagc-tggagctgcctttgggcatgggt 242  Q
    |||||||||||| ||||||||||||| ||||||||||||  ||||| |||||||||| ||||| ||  | || ||  ||||||| |||||||||||||||    
T  4930203 atcttcttaaacgtgatttgtcttgtgggtgcagaaactcgccatgagcatgaaccttacgctgaacggctgaagtgtggagcttcctttgggcatgggt 4930302  T
Q  243 ggaattggaaaataggtaatgaa 265  Q
    |||||||||||||||||||||||    
T  4930303 ggaattggaaaataggtaatgaa 4930325  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 4950964 - 4951006
Alignment:
Q  220 tggagctgcctttgggcatgggtggaattggaaaataggtaat 262  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  4950964 tggagctgcctttgggcatgggtggaactggaaaataggtaat 4951006  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 4916694 - 4916726
Alignment:
Q  77 catgtattttatcaagaaattaaggtatatata 109  Q
    |||||||||||||||||||||||||||||||||    
T  4916694 catgtattttatcaagaaattaaggtatatata 4916726  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 4930090 - 4930122
Alignment:
Q  77 catgtattttatcaagaaattaaggtatatata 109  Q
    |||||||||||||||||||||||||||||||||    
T  4930090 catgtattttatcaagaaattaaggtatatata 4930122  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 4985049 - 4985081
Alignment:
Q  77 catgtattttatcaagaaattaaggtatatata 109  Q
    |||||||||||||||||||||||||||||||||    
T  4985049 catgtattttatcaagaaattaaggtatatata 4985081  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 4975356 - 4975387
Alignment:
Q  78 atgtattttatcaagaaattaaggtatatata 109  Q
    ||||||||||||||||||||||||||||||||    
T  4975356 atgtattttatcaagaaattaaggtatatata 4975387  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 4961220 - 4961264
Alignment:
Q  220 tggagctgcctttgggcatgggtggaattggaaaataggtaatgaa 265  Q
    |||||||||||| ||||||||||||||| || ||||||||||||||    
T  4961220 tggagctgcctt-gggcatgggtggaatcggtaaataggtaatgaa 4961264  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 5030493 - 5030537
Alignment:
Q  220 tggagctgcctttgggcatgggtggaattggaaaataggtaatgaa 265  Q
    |||||||||||| ||||||||||||||| || ||||||||||||||    
T  5030493 tggagctgcctt-gggcatgggtggaatcggtaaataggtaatgaa 5030537  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 260
Target Start/End: Complemental strand, 5060171 - 5060142
Alignment:
Q  231 ttgggcatgggtggaattggaaaataggta 260  Q
    ||||||||||||||||||||||||||||||    
T  5060171 ttgggcatgggtggaattggaaaataggta 5060142  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 4938353 - 4938385
Alignment:
Q  77 catgtattttatcaagaaattaaggtatatata 109  Q
    |||| ||||||||||||||||||||||||||||    
T  4938353 catgcattttatcaagaaattaaggtatatata 4938385  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 4950739 - 4950771
Alignment:
Q  77 catgtattttatcaagaaattaaggtatatata 109  Q
    |||||||||||||||||||||||||||| ||||    
T  4950739 catgtattttatcaagaaattaaggtatgtata 4950771  T

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Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 111 - 290
Target Start/End: Original strand, 44331546 - 44331720
Alignment:
Q  111 atatgtaaacgtaacttgaaacaagttgatcattatcttcttaaacatgatttgtcttgttggtgcagaaacttaccatgtgcatgaacctcacgct-ca 209  Q
    |||||||||| ||| |||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| | |  |    
T  44331546 atatgtaaacataagttgaaacaagttaattattatcttcttaaacgtgatttgtcttgttggtgcagaaactcaccatgtgcatgaatctcatgttgga 44331645  T
Q  210 agtgtggagctggagctgcctttgggcatgggtggaattggaaaataggtaatgaattttgttttttacttcctctttctt 290  Q
    ||||      ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44331646 agtg------tggagctgcttttgggcatgggtggaattggaaaataggtaataaattttgttttttacttcctctttctt 44331720  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 290
Target Start/End: Original strand, 44310298 - 44310458
Alignment:
Q  111 atatgtaaacgtaacttgaaacaagttgatcattatcttcttaaacatgatttgtcttgttggtgcagaaacttaccatgtgcatgaacctcacgctcaa 210  Q
    |||||||||| |||  ||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||||  |||||||                
T  44310298 atatgtaaacataagctgaaacaagttaattattatcttcttaaacgtgatttgtcttgttggtgcagaaactcaccattcgcatgaa------------ 44310385  T
Q  211 gtgtggagctggagctgcctttgggcatgggtggaattggaaaataggtaatgaattttgttttttacttcctctttctt 290  Q
      ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44310386 --gtgg-----gagctgcctttgggcatgggtggaattggaaaataggtaatgaattttgttttttacttcctttttctt 44310458  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 44310022 - 44310054
Alignment:
Q  77 catgtattttatcaagaaattaaggtatatata 109  Q
    |||||||||||||||||||||||||||| ||||    
T  44310022 catgtattttatcaagaaattaaggtatgtata 44310054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 44366225 - 44366257
Alignment:
Q  77 catgtattttatcaagaaattaaggtatatata 109  Q
    |||||||||||||||||||||||||| ||||||    
T  44366225 catgtattttatcaagaaattaaggtgtatata 44366257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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