View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_63 (Length: 286)

Name: NF19773_low_63
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_63
NF19773_low_63
[»] chr8 (8 HSPs)
chr8 (1-273)||(6457404-6457676)
chr8 (44-273)||(6451219-6451444)
chr8 (32-110)||(6263796-6263874)
chr8 (33-109)||(6289528-6289604)
chr8 (33-109)||(6321910-6321986)
chr8 (33-109)||(6332484-6332560)
chr8 (54-109)||(6275041-6275096)
chr8 (55-109)||(6391485-6391539)
[»] chr5 (1 HSPs)
chr5 (48-152)||(9604078-9604182)
[»] chr2 (2 HSPs)
chr2 (36-110)||(42688075-42688149)
chr2 (38-118)||(42693643-42693723)
[»] chr3 (1 HSPs)
chr3 (51-109)||(36744658-36744716)


Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 6457676 - 6457404
Alignment:
Q  1 tcatgcacttttgaattaatccaatttgacaattattttgagcagttagcaagtctgcatggatgacagatgaagaatttggaagagagatggttgctgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6457676 tcatgcacttttgaattaatccaatttgacaattattttgagcagttagcaagtctgcatggatgacagatgaagaatttggaagagagatggttgctgg 6457577  T
Q  101 tgtaaatcctaatgtgattcgccttcttcaagtatgtaccaaatgtattcttaacatatattagctaaaatatgtattttgttgtcaatagctcaatgct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6457576 tgtaaatcctaatgtgattcgccttcttcaagtatgtaccaaatgtattcttaatatatattagctaaaatatgtattttgttgtcaatagctcaatgct 6457477  T
Q  201 tatatatttctatgcaattattctttgatataccagaagtttccaccaaaaagcacactagataccactgtct 273  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6457476 tatatatttctatgcaattattctttgatataccaggagtttccaccaaaaagcacactagataccactgtct 6457404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 273
Target Start/End: Complemental strand, 6451444 - 6451219
Alignment:
Q  44 agttagcaagtctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcctaatgtgattcgccttcttcaagtatgtaccaaa 143  Q
    ||||||||||||||||||||  || |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||     
T  6451444 agttagcaagtctgcatggaatactgatgaagaatttggaagagagatgcttgctggtgtaaatcctaatgtgattcgtcttcttcaagtaagtaccaat 6451345  T
Q  144 tgtattcttaacatatattagctaaaatatgtattttgttgtcaatagctcaatgcttatatatttctatg---caattattctttgatataccagaagt 240  Q
    ||||||        ||||  |||||||||||||||||||| ||||||    |||  | | |||||||| ||    ||||||| | ||||||| ||| |||    
T  6451344 tgtatt-------aatatctgctaaaatatgtattttgttatcaatattcaaatattcacatatttctttgtataaattattttctgatataacaggagt 6451252  T
Q  241 ttccaccaaaaagcacactagataccactgtct 273  Q
    | ||||||||||||||||||||| |||||||||    
T  6451251 tcccaccaaaaagcacactagatgccactgtct 6451219  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 6263874 - 6263796
Alignment:
Q  32 attattttgagcagttagcaagtctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcct 110  Q
    ||||||||||| ||| || ||||||||||||||||| ||||| |||||||||||||||||  |||||||||||||||||    
T  6263874 attattttgagtagtgagtaagtctgcatggatgactgatgatgaatttggaagagagattcttgctggtgtaaatcct 6263796  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 6289604 - 6289528
Alignment:
Q  33 ttattttgagcagttagcaagtctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcc 109  Q
    ||||||||||||||||   |||||| ||||||||| ||||||||||||  |||||||||| |||||||||| |||||    
T  6289604 ttattttgagcagttaatcagtctggatggatgactgatgaagaatttacaagagagatgattgctggtgtgaatcc 6289528  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 6321986 - 6321910
Alignment:
Q  33 ttattttgagcagttagcaagtctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcc 109  Q
    ||||||||||||||||   ||||||| |||||||| ||||||||||||| ||| |||||| |||||||||| |||||    
T  6321986 ttattttgagcagttaatcagtctgcgtggatgactgatgaagaatttgcaagggagatgattgctggtgtgaatcc 6321910  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 6332560 - 6332484
Alignment:
Q  33 ttattttgagcagttagcaagtctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcc 109  Q
    ||||||||||||||||   |||||||||||||||| |||| |||||||| ||| |||||| |||||||||| |||||    
T  6332560 ttattttgagcagttaatcagtctgcatggatgactgatggagaatttgcaagggagatgattgctggtgtgaatcc 6332484  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 6275096 - 6275041
Alignment:
Q  54 tctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcc 109  Q
    |||| ||||||||| || |||||||||  |||||||||| ||||||||||||||||    
T  6275096 tctggatggatgactgacgaagaatttacaagagagatgattgctggtgtaaatcc 6275041  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 6391539 - 6391485
Alignment:
Q  55 ctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcc 109  Q
    ||||||||||||| ||||| ||||||| ||| |||||| |||||||||| |||||    
T  6391539 ctgcatggatgactgatgaggaatttgcaagggagatgattgctggtgtgaatcc 6391485  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 9604078 - 9604182
Alignment:
Q  48 agcaagtctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcctaatgtgattcgccttcttcaagtatgtaccaaatgta 147  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||  ||||||||||||||| |||||| ||  ||||| ||    
T  9604078 agcaaatctgcatggatgactgatgaagaatttggaagagagatggttgctggagtaaacccttgtgtgattcgccttctacaagtaagtttcaaatcta 9604177  T
Q  148 ttctt 152  Q
    |||||    
T  9604178 ttctt 9604182  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 42688075 - 42688149
Alignment:
Q  36 ttttgagcagttagcaagtctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcct 110  Q
    ||||||||||| || |||||||||||||||||||||||||| |||| |||||| ||| |||||||||||||||||    
T  42688075 ttttgagcagtgagtaagtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatcct 42688149  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 42693723 - 42693643
Alignment:
Q  38 ttgagcagttagcaagtctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcctaatgtgat 118  Q
    |||| |||| |||| ||||||||||||||| ||||||||||||| |||||| ||| | ||||| |||||||| ||||||||    
T  42693723 ttgaacagtaagcaggtctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatccaaatgtgat 42693643  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 36744658 - 36744716
Alignment:
Q  51 aagtctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcc 109  Q
    ||||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||    
T  36744658 aagtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcc 36744716  T

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