View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_64 (Length: 286)

Name: NF19773_low_64
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_64
NF19773_low_64
[»] chr7 (1 HSPs)
chr7 (27-275)||(38757882-38758126)
[»] chr4 (2 HSPs)
chr4 (27-275)||(34539363-34539607)
chr4 (65-275)||(11148636-11148831)
[»] chr2 (4 HSPs)
chr2 (27-275)||(44905746-44905978)
chr2 (27-172)||(28166992-28167133)
chr2 (201-275)||(28166901-28166975)
chr2 (204-267)||(37957873-37957936)
[»] chr1 (2 HSPs)
chr1 (27-178)||(13223167-13223313)
chr1 (201-247)||(13223336-13223382)
[»] chr3 (3 HSPs)
chr3 (201-267)||(39713061-39713127)
chr3 (215-275)||(3149558-3149616)
chr3 (204-267)||(11528669-11528732)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 27 - 275
Target Start/End: Complemental strand, 38758126 - 38757882
Alignment:
Q  27 ataataatcaaattttggaatttaaaattcannnnnnnccaccttctaccttgctcagttctgtctctcttcttcattccttccatgtccaccctactat 126  Q
    ||||| |||||||||||||||||||||||||       ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    |    
T  38758126 ataatcatcaaattttggaatttaaaattcattcttt-ccaccttcttccttgctcagttctatctctcttcttcattccttccatgtccaccctc---t 38758031  T
Q  127 caaagttcatcaaaaagtcatttcctttatgagcaaactcttgtttttcgagnnnnnnnnnnnnnnnnnnnnnnttatcttcctctcacattttttgact 226  Q
    ||||| ||||||||||  |||||||||  ||||||| ||||||||||| |||                      |||||||||||| |||||||||| ||    
T  38758030 caaagctcatcaaaaacccatttccttattgagcaagctcttgttttttgagcaacaacaaaaacaacaacaacttatcttcctctaacattttttgcct 38757931  T
Q  227 tgcattttgctggtccagtctacgttaaatgcatattcttcgacccttt 275  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38757930 tgcattttgttggtccagtctacgttaaatgcatattcttcgacccttt 38757882  T

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Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 27 - 275
Target Start/End: Complemental strand, 34539607 - 34539363
Alignment:
Q  27 ataataatcaaattttggaatttaaaattcannnnnnnccaccttctaccttgctcagttctgtctctcttcttcattccttccatgtccaccctactat 126  Q
    ||||| |||||||||||||||||||||||||       || |||||| |||||||||||||| ||||||||||| |||||||||||||| |||||    |    
T  34539607 ataatcatcaaattttggaatttaaaattcattctttccc-ccttcttccttgctcagttctatctctcttctttattccttccatgtctaccctc---t 34539512  T
Q  127 caaagttcatcaaaaagtcatttcctttatgagcaaactcttgtttttcgagnnnnnnnnnnnnnnnnnnnnnnttatcttcctctcacattttttgact 226  Q
    ||||| ||||||||||  |||||||||  |||||||||||||||||||||||                      |||||||||||||| |||||||||||    
T  34539511 caaagctcatcaaaaatccatttccttattgagcaaactcttgtttttcgagcaacaacaaaaacaacaacaacttatcttcctctcatattttttgact 34539412  T
Q  227 tgcattttgctggtccagtctacgttaaatgcatattcttcgacccttt 275  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  34539411 tgcattttgctggtccaatctacattaaatgcatattcttcgacccttt 34539363  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 65 - 275
Target Start/End: Original strand, 11148636 - 11148831
Alignment:
Q  65 ccaccttctaccttgctcagttctgtctctcttcttcattccttccatgtccaccctactatcaaagttcatcaaaaagtcatttcctttatgagcaaac 164  Q
    ||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||    |||||| ||||||||||  ||||| |||  |||||||||    
T  11148636 ccacctttttccttgctcagttctatctctcttcttcattccttccatgtccaccctc---tcaaagctcatcaaaaacccattttcttattgagcaaac 11148732  T
Q  165 tcttgtttttcgagnnnnnnnnnnnnnnnnnnnnnnttatcttcctctcacattttttgacttgcattttgctggtccagtctacgttaaatgcatattc 264  Q
    ||||||||||||||                      ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11148733 tcttgtttttcgagcaacaacaac------------ttatcttcctctcacattttttgacttgcattttgttggtccagtctacgttaaatgcatattc 11148820  T

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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 275
Target Start/End: Complemental strand, 44905978 - 44905746
Alignment:
Q  27 ataataatcaaattttggaatttaaaattcannnnnnnccaccttctaccttgctcagttctgtctctcttcttcattccttccatgtccaccctactat 126  Q
    ||||| ||||||||||||||||||||||| |       |||| |||| | |||||||||||| ||| ||||||||||||||||||||||||||||    |    
T  44905978 ataatcatcaaattttggaatttaaaatt-aattctttccactttcttctttgctcagttctatctgtcttcttcattccttccatgtccaccctc---t 44905883  T
Q  127 caaagttcatcaaaaagtcatttcctttatgagcaaactcttgtttttcgagnnnnnnnnnnnnnnnnnnnnnnttatcttcctctcacattttttgact 226  Q
    ||||| |||||||||| ||||||||||  |||||||||||||||||||||||                      ||||||||||||||||||||||||||    
T  44905882 caaagctcatcaaaaactcatttccttattgagcaaactcttgtttttcgagcaacaacaac------------ttatcttcctctcacattttttgact 44905795  T
Q  227 tgcattttgctggtccagtctacgttaaatgcatattcttcgacccttt 275  Q
     ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44905794 agcattttgctgatccagtctacgttaaatgcatattcttcgacccttt 44905746  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 28167133 - 28166992
Alignment:
Q  27 ataataatcaaattttggaatttaaaattcannnnnnnccaccttctaccttgctcagttctgtctctcttcttcattccttccatgtccaccctactat 126  Q
    ||||| |||||||||||||||||||||||||       ||  ||||| |||||||||||||| ||||||||||||||||||||||||||||||   || |    
T  28167133 ataatcatcaaattttggaatttaaaattcattcttt-ccggcttcttccttgctcagttctatctctcttcttcattccttccatgtccacc---ctct 28167038  T
Q  127 caaagttcatcaaaaagtcatttcctttatgagcaaactcttgttt 172  Q
    ||||| ||||||||||  |||||||||  |||||||||||||||||    
T  28167037 caaagctcatcaaaaacccatttccttattgagcaaactcttgttt 28166992  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 28166975 - 28166901
Alignment:
Q  201 ttatcttcctctcacattttttgacttgcattttgctggtccagtctacgttaaatgcatattcttcgacccttt 275  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  28166975 ttatcttcctttcacattttttgacttgcattttgctggtccagtctacattaaatgaatatttttcgacccttt 28166901  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 37957873 - 37957936
Alignment:
Q  204 tcttcctctcacattttttgacttgcattttgctggtccagtctacgttaaatgcatattcttc 267  Q
    |||||||||||||||  ||||||||| |||||| ||||||||||| ||| || || ||||||||    
T  37957873 tcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttc 37957936  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 13223167 - 13223313
Alignment:
Q  27 ataataatcaaattttggaatttaaaattcannnnnnnccaccttctaccttgctcagttctgtctctcttcttcattccttccatgtccaccctactat 126  Q
    ||||| |||||||||||||||||||||||||       |||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||   || |    
T  13223167 ataatcatcaaattttggaatttaaaattcattcttt-ccac-ttcttccttgctcaattctatctctcttcttcattccttccatgtccacc---ctct 13223261  T
Q  127 caaagttcatcaaaaagtcatttcctttatgagcaaactcttgtttttcgag 178  Q
    ||||| ||||||||||  |||||||||  |||||||||||||||||||||||    
T  13223262 caaagctcatcaaaaacccatttccttattgagcaaactcttgtttttcgag 13223313  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 13223336 - 13223382
Alignment:
Q  201 ttatcttcctctcacattttttgacttgcattttgctggtccagtct 247  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  13223336 ttatcttcctctcaaatttttttacttgcattttgctggtccagtct 13223382  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 39713127 - 39713061
Alignment:
Q  201 ttatcttcctctcacattttttgacttgcattttgctggtccagtctacgttaaatgcatattcttc 267  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| || ||||||||    
T  39713127 ttatcttcctctcacatttcttgacttgcattttgctggtccaatctacgctaaacgcttattcttc 39713061  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 3149558 - 3149616
Alignment:
Q  215 cattttttgacttgcattttgctggtccagtctacgttaaatgcatattcttcgacccttt 275  Q
    |||||||||| |||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  3149558 cattttttgagttgcattttgttg--ccagtctacgttaaatgcatattcttcgacccttt 3149616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 11528732 - 11528669
Alignment:
Q  204 tcttcctctcacattttttgacttgcattttgctggtccagtctacgttaaatgcatattcttc 267  Q
    |||||||||||||||  | |||||||||||||| |||||||||||||||||| || ||||||||    
T  11528732 tcttcctctcacattcctcgacttgcattttgcaggtccagtctacgttaaacgcctattcttc 11528669  T

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