View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_65 (Length: 280)
Name: NF19773_low_65
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 267
Target Start/End: Complemental strand, 19243401 - 19243155
Alignment:
| Q |
21 |
atgtgacacatgctattctttcttcttcattttctatcaatccaaaataacaagcacaaccatagaattatatttctacacatgatagaaatcaacttat |
120 |
Q |
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| T |
19243401 |
atgtgacacatcctattctttcttcttcattttccattaatccaaaacaacgagcacaaccgtagagttatatttctacacatcatagaaatcaacttat |
19243302 |
T |
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| Q |
121 |
gatccgttacctgagcaccccatcctaaacctagggagaatattgctgatggtgctgaccatgatccatctgattttctcgaaacaaccaaaccagtacc |
220 |
Q |
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| T |
19243301 |
gattcattacctgagcaccccatcctaaacctagggagaatattgctgatggtgctgaccatgatccatctgattttctcgaaacaaccaaaccagtacc |
19243202 |
T |
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| Q |
221 |
cagtttgtatgagagcaatgcaccggccttgacaactgttaaaattg |
267 |
Q |
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| T |
19243201 |
cagtttgtatgagagaaatgcaccagccttgacaactgttaaaattg |
19243155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 267
Target Start/End: Original strand, 51597073 - 51597212
Alignment:
| Q |
128 |
tacctgagcaccccatcctaaacctagggagaatattgctgatggtgctgaccatgatccatctgattttctcgaaacaaccaaaccagtacccagtttg |
227 |
Q |
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| T |
51597073 |
tacctgagcaccccatcctaaacccatggagcatatagctgatggtgcagaccatgatccatcatatcttcgagctacaaccaaaccagtaccaactttg |
51597172 |
T |
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| Q |
228 |
tatgagagcaatgcaccggccttgacaactgttaaaattg |
267 |
Q |
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| T |
51597173 |
taagagaccagagcgccagctttgacaactgttaaaattg |
51597212 |
T |
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