View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_68 (Length: 272)
Name: NF19773_low_68
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 12306077 - 12306338
Alignment:
| Q |
1 |
agcccctaccacatatatattttttgcatcagcaattccagttatttcatttggagaacaattgcaaagagatacaggtacattgttaattttatcgatg |
100 |
Q |
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| T |
12306077 |
agcccctaccacatatatattttttgcatcagcaattccagttatttcatttggagaacaattgcaaagagatacaggtacattgttaatttcatcgatg |
12306176 |
T |
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| Q |
101 |
catgaaatcttgctatataaaaagcgatgataatttagtatatcttcaattgaatgttatgtgtaccaacaatgtctagatgggatactcactgctatac |
200 |
Q |
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| T |
12306177 |
catggaatcttgttatataaaaagcaatgataatttagtatatcttcaattgaatgttatgtgtaccaacaatgtctagatgggatactcactgctgtac |
12306276 |
T |
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| Q |
201 |
aaacattagcatctactgcactgtgtggaattatacactctattattggaggccagcctttg |
262 |
Q |
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| T |
12306277 |
aaacattagcatctactgcactgtgtggaattatacactctattattggaggccagcctttg |
12306338 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 34927292 - 34927246
Alignment:
| Q |
11 |
acatatatattttttgcatcagcaattccagttatttcatttggaga |
57 |
Q |
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| T |
34927292 |
acatacatattttttgcttcagcaattcctgttatttcttttggaga |
34927246 |
T |
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