View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_72 (Length: 253)

Name: NF19773_low_72
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_72
NF19773_low_72
[»] chr2 (9 HSPs)
chr2 (46-197)||(14662328-14662476)
chr2 (193-253)||(14662566-14662626)
chr2 (200-253)||(17649114-17649167)
chr2 (46-196)||(45338572-45338715)
chr2 (46-196)||(45336260-45336403)
chr2 (209-253)||(132918-132962)
chr2 (200-253)||(45336502-45336556)
chr2 (200-253)||(45338814-45338868)
chr2 (223-253)||(1454197-1454227)
[»] chr3 (11 HSPs)
chr3 (46-199)||(48027288-48027438)
chr3 (46-199)||(48025108-48025258)
chr3 (46-197)||(48023999-48024147)
chr3 (46-199)||(48024548-48024698)
chr3 (46-196)||(28784514-28784657)
chr3 (211-253)||(5913625-5913667)
chr3 (200-241)||(48023861-48023902)
chr3 (121-196)||(5354612-5354686)
chr3 (200-253)||(28784756-28784810)
chr3 (200-253)||(48707542-48707596)
chr3 (121-196)||(48707695-48707769)
[»] chr7 (4 HSPs)
chr7 (46-194)||(13111118-13111263)
chr7 (46-179)||(13108840-13108970)
chr7 (200-253)||(13108672-13108725)
chr7 (200-249)||(13110968-13111017)
[»] chr6 (1 HSPs)
chr6 (46-108)||(6723461-6723523)
[»] chr5 (4 HSPs)
chr5 (46-196)||(32798007-32798150)
chr5 (46-196)||(32800319-32800462)
chr5 (200-253)||(32798249-32798303)
chr5 (200-253)||(32800561-32800615)
[»] chr8 (2 HSPs)
chr8 (46-196)||(44734153-44734296)
chr8 (46-108)||(44731842-44731904)
[»] chr1 (4 HSPs)
chr1 (47-108)||(9535257-9535318)
chr1 (46-196)||(1550157-1550300)
chr1 (200-253)||(1550400-1550454)
chr1 (200-253)||(9535498-9535553)
[»] chr4 (4 HSPs)
chr4 (46-197)||(7230963-7231108)
chr4 (46-196)||(22804610-22804755)
chr4 (200-253)||(7230814-7230867)
chr4 (200-253)||(22804854-22804908)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 46 - 197
Target Start/End: Original strand, 14662328 - 14662476
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       | ||||||||||||||||||||||||||||    
T  14662328 taattaaagtgttgcttgtttatgtataagtgtcataattagatcgttgcttatttagtaagtaaaa---cagtccctaggtaatgatgtctattgttgc 14662424  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttc 197  Q
    ||||||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  14662425 taggtaataatgactagtgcttaagagtagatttcgtgcagatcttatgttc 14662476  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 14662566 - 14662626
Alignment:
Q  193 tgttcctaaaacattgttgtcttctctaattttctggtttttcttctttcttctccaccat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662566 tgttcctaaaacattgttgtcttctctaattttctggtttttcttctttcttctccaccat 14662626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 17649114 - 17649167
Alignment:
Q  200 aaaacattgttgtcttctctaattttctggtttttcttctttcttctccaccat 253  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17649114 aaaacattgttgtcttctctaattttctggttttacttctttcttctccaccat 17649167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 45338572 - 45338715
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    ||||||| |||||||||||||| || ||||||||||| |||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  45338572 taattaatgtgttgcttgtttaagtttaagtgtcatagttagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 45338665  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 196  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  45338666 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 45338715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 45336260 - 45336403
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    ||||||| ||||||||||| || || ||||||||||| |||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  45336260 taattaatgtgttgcttgtgtaagtttaagtgtcatatttagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 45336353  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 196  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  45336354 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 45336403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 132918 - 132962
Alignment:
Q  209 ttgtcttctctaattttctggtttttcttctttcttctccaccat 253  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||    
T  132918 ttgtcttttctatttttctggtttttcttctttcttctccaccat 132962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 45336502 - 45336556
Alignment:
Q  200 aaaacattgttgtcttctctaattttctggtttt-tcttctttcttctccaccat 253  Q
    |||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||    
T  45336502 aaaacattgttgtcttctttaactttttggttttttcttctttcttctccaccat 45336556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 45338814 - 45338868
Alignment:
Q  200 aaaacattgttgtcttctctaattttctggtttt-tcttctttcttctccaccat 253  Q
    |||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||    
T  45338814 aaaacattgttgtcttctttaactttttggttttttcttctttcttctccaccat 45338868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 253
Target Start/End: Original strand, 1454197 - 1454227
Alignment:
Q  223 tttctggtttttcttctttcttctccaccat 253  Q
    |||||||||||||||||||||||||||||||    
T  1454197 tttctggtttttcttctttcttctccaccat 1454227  T

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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 48027438 - 48027288
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       | ||||||||||||||||||||||||||      
T  48027438 taatttaagtgttgcttgtttatgtataagtgtcataattagattgttgcttatttagtaagt---aaaacagtccctaggtaatgatgtctattgttct 48027342  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttcct 199  Q
    |||||||| |||||  |||||||||||||||||| ||| |||||||||||||||    
T  48027341 taggtaatgatgactagtgcttaagagtagatttagtgtagattttatgttcct 48027288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 48025258 - 48025108
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||       |  |||| || |||||||||||||||||      
T  48025258 taattaaagtgttgcttgtttatgtataaatgtcataattagattgttgcttatttagtaagt---aaaacaatcccaagttaatgatgtctattgttct 48025162  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttcct 199  Q
    |||||||| |||||  |||||||||||||||||| ||| |||||||||||||||    
T  48025161 taggtaatgatgactagtgcttaagagtagatttagtgtagattttatgttcct 48025108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 48024147 - 48023999
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||       | ||||| ||||||||||||||| ||        
T  48024147 taattaaagtgttacttgtttatgtataagtgtcataattagattgttgcttatttagtaagt---aaaacagtcccaaggtaatgatgtctaatgaact 48024051  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttc 197  Q
    |||||||| |||||  |||||||||||||||||| |||||||||||||||||    
T  48024050 taggtaatgatgactagtgcttaagagtagatttagtgcagattttatgttc 48023999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 48024698 - 48024548
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||       | ||||| |||||||||||| |||||||      
T  48024698 taattaaaatgttgcatgtttatgtataagtgtcataattagattgttgcttatttagtaagt---aaaacagtcccaaggtaatgatgtttattgttct 48024602  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttcct 199  Q
    |||||||| |||||  |||||||| ||||||||| ||| |||||||||||||||    
T  48024601 taggtaatgatgactagtgcttaatagtagatttagtgtagattttatgttcct 48024548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 28784514 - 28784657
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    ||||||| |||||||||||||| || ||||||| ||| |||||| ||||||||||| ||||||         |||| ||||||||||||||||| |||      
T  28784514 taattaatgtgttgcttgtttaagtttaagtgttatagttagattgttgcttatttggtaagtaaga-----gtcc-taggtaatgatgtctatggttct 28784607  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 196  Q
    |||||||| |||||  ||| ||| |||||||||| ||||||||||||||||    
T  28784608 taggtaatgatgactagtgttta-gagtagatttagtgcagattttatgtt 28784657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 5913625 - 5913667
Alignment:
Q  211 gtcttctctaattttctggtttttcttctttcttctccaccat 253  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  5913625 gtcttctctaattttctggtttttcttctttcttgtccaccat 5913667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 48023902 - 48023861
Alignment:
Q  200 aaaacattgttgtcttctctaattttctggtttttcttcttt 241  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  48023902 aaaatattgttgtcttctctaattttctggtttttcttcttt 48023861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 5354686 - 5354612
Alignment:
Q  121 cctaggtaatgatgtctattgttgctaggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 196  Q
    ||||||||||||||| ||| |||  ||||||||||||||  ||| ||| |||||||||| ||||||||||||||||    
T  5354686 cctaggtaatgatgtttatggttcttaggtaataatgactagtgttta-gagtagatttagtgcagattttatgtt 5354612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 28784756 - 28784810
Alignment:
Q  200 aaaacattgttgtcttctctaattttctgg-tttttcttctttcttctccaccat 253  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||    
T  28784756 aaaacattgttgtcttctctaactttttggttttttcttctttcttttccaccat 28784810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 48707596 - 48707542
Alignment:
Q  200 aaaacattgttgtcttctctaattttctggttttt-cttctttcttctccaccat 253  Q
    |||| ||||||||||||||||||||| || ||||| |||||||||||||||||||    
T  48707596 aaaatattgttgtcttctctaattttttgattttttcttctttcttctccaccat 48707542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 48707769 - 48707695
Alignment:
Q  121 cctaggtaatgatgtctattgttgctaggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 196  Q
    ||||||||||||||||||| |||  |||||||| |||||  ||| |||| ||||||||| ||| ||||||||||||    
T  48707769 cctaggtaatgatgtctatggtttttaggtaatgatgactagtgtttaa-agtagatttagtgtagattttatgtt 48707695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 194
Target Start/End: Complemental strand, 13111263 - 13111118
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||         ||||||||||||| ||||||||||||      
T  13111263 taattaaagtgttgcttgtttatgtagaagtgccataattagattgttgcttatttagtaagtaaaata---gtccctaggtaataatgtctattgttct 13111167  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatg 194  Q
    |||||||| |||||  |||||||||||||||||| ||||| ||||||||    
T  13111166 taggtaatgatgactagtgcttaagagtagatttagtgcaaattttatg 13111118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 13108970 - 13108840
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||       | ||||||||||||||||   |||||||      
T  13108970 taattaaagtgttgcttgtttatttataagtgtcataattagattgttgcttatttagtaagt---aaaacagtccctaggtaatgatacatattgttct 13108874  T
Q  146 taggtaataatgaccggtgcttaagagtagattt 179  Q
    | |||||| |||||  ||||||||||||||||||    
T  13108873 tgggtaatgatgactagtgcttaagagtagattt 13108840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 13108725 - 13108672
Alignment:
Q  200 aaaacattgttgtcttctctaattttctggtttttcttctttcttctccaccat 253  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13108725 aaaacattgttgtcttctctaattttctggattttcttctttcttctccaccat 13108672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 13111017 - 13110968
Alignment:
Q  200 aaaacattgttgtcttctctaattttctggtttttcttctttcttctcca 249  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13111017 aaaatattgttgtcttctctaattttctggtttttcttctttcttctcca 13110968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 6723461 - 6723523
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 108  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||    
T  6723461 taattaaagtgttgcttgtttaagtgtaagtgtcataattagattgttgcttatttagtaagt 6723523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 32798007 - 32798150
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    ||||||| |||||||||||||| || |||||||||||||||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  32798007 taattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 32798100  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 196  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  32798101 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 32798150  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 32800319 - 32800462
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    ||||||| |||||||||||||| || |||||||||||||||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  32800319 taattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 32800412  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 196  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  32800413 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 32800462  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 32798249 - 32798303
Alignment:
Q  200 aaaacattgttgtcttctctaattttctggtttt-tcttctttcttctccaccat 253  Q
    |||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||    
T  32798249 aaaacattgttgtcttctttaactttttggttttttcttctttcttctccaccat 32798303  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 32800561 - 32800615
Alignment:
Q  200 aaaacattgttgtcttctctaattttctggtttt-tcttctttcttctccaccat 253  Q
    |||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||    
T  32800561 aaaacattgttgtcttctttaactttttggttttttcttctttcttctccaccat 32800615  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 44734153 - 44734296
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    ||||||| |||||||||||||| || ||||||||||| |||| | ||||||||||| ||||||         |||| ||||||||||||||||| |||      
T  44734153 taattaatgtgttgcttgtttaagtttaagtgtcatagttaggttgttgcttatttggtaagtaaga-----gtcc-taggtaatgatgtctatggttct 44734246  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 196  Q
    |||||||| |||||  ||| ||| |||||||||| ||||||||||||||||    
T  44734247 taggtaatgatgactagtgttta-gagtagatttagtgcagattttatgtt 44734296  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 44731842 - 44731904
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 108  Q
    ||||||| |||||||||||||| || ||||||||||| |||||| ||||||||||| ||||||    
T  44731842 taattaatgtgttgcttgtttaagtttaagtgtcatagttagattgttgcttatttggtaagt 44731904  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 9535257 - 9535318
Alignment:
Q  47 aattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 108  Q
    |||||| |||||||||||||| || |||||||||||||||||| ||||||||||| ||||||    
T  9535257 aattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgcttatttggtaagt 9535318  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 1550157 - 1550300
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    ||||||| ||||||||||| || || ||||||||||| |||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  1550157 taattaatgtgttgcttgtataagtttaagtgtcatagttagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 1550250  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 196  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  1550251 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 1550300  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 1550400 - 1550454
Alignment:
Q  200 aaaacattgttgtcttctctaattttctgg-tttttcttctttcttctccaccat 253  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  1550400 aaaacattgttgtcttctctaactttttggttttttcttctttcttctccaccat 1550454  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 9535498 - 9535553
Alignment:
Q  200 aaaacattgttgtcttctctaattttctgg--tttttcttctttcttctccaccat 253  Q
    |||||||||||||||||||||| ||| |||  ||||||||||||||||||||||||    
T  9535498 aaaacattgttgtcttctctaactttttggtttttttcttctttcttctccaccat 9535553  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 7231108 - 7230963
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    |||||| | ||||||||||||| ||   |||||||||||||||| | ||||||||||||||||         |||| ||||||||||||||||| ||| |    
T  7231108 taattagattgttgcttgtttaagtt--agtgtcataattagattgctgcttatttagtaagtaaagta---gtccgtaggtaatgatgtctatggttcc 7231014  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttc 197  Q
    |||||||| |||||  ||| || |||| |||||| |||||||||||||||||    
T  7231013 taggtaatgatgactagtg-tttagagcagatttagtgcagattttatgttc 7230963  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 22804610 - 22804755
Alignment:
Q  46 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 145  Q
    ||||||| | |||||||||||| || |||||| ||||||||||| | ||||||||| ||||||         |||| ||||||||||||||||| |||      
T  22804610 taattaatgcgttgcttgtttaagtttaagtgccataattagattgctgcttatttggtaagtaaaaga---gtcc-taggtaatgatgtctatggttct 22804705  T
Q  146 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 196  Q
    |||||||| |||||  ||| || |||||||||||  |||||||||||||||    
T  22804706 taggtaatgatgactagtg-tttagagtagatttaatgcagattttatgtt 22804755  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 7230867 - 7230814
Alignment:
Q  200 aaaacattgttgtcttctctaattttctggtttttcttctttcttctccaccat 253  Q
    ||||| || |||||||||||| |||||| | |||||||||||||||||||||||    
T  7230867 aaaactttattgtcttctctagttttcttgattttcttctttcttctccaccat 7230814  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 22804854 - 22804908
Alignment:
Q  200 aaaacattgttgtcttctctaattttctggtttt-tcttctttcttctccaccat 253  Q
    |||| |||||| |||||||||| ||| ||||||| ||||||||||||||||||||    
T  22804854 aaaatattgttatcttctctaactttttggttttttcttctttcttctccaccat 22804908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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