View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_73 (Length: 253)
Name: NF19773_low_73
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 51910281 - 51910116
Alignment:
| Q |
13 |
aaaatagtgtatatataaatgtaacagaatactcaatttcagcatagaaatcattttgagaagcaagaaaacaaacctctagaaaacctatctctctttc |
112 |
Q |
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| T |
51910281 |
aaaatagtgtatatataaatgtaacagaattctcaatttcagcatagaaagcattttgagaagcaagaaaacaaacctctagaaaacctatctctctttc |
51910182 |
T |
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| Q |
113 |
aagcatctgaaccttggccatttcacggcgtttgccatacaaatctggatattcaggaggtgactt |
178 |
Q |
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| T |
51910181 |
aagcatctgaaccttggccatttcacggcgtttgccatacaaatctggatattcaggaggtgactt |
51910116 |
T |
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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 18422632 - 18422709
Alignment:
| Q |
80 |
aaaacaaacctctagaaaacctatctctctttcaagcatctgaaccttggccatttcacggcgtttgccatacaaatc |
157 |
Q |
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||||| |||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||| |
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| T |
18422632 |
aaaactaacctcaagaaaacttatctctctttcaagcatttgaactttggccatttcacggcgctttccatacaaatc |
18422709 |
T |
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