View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_82 (Length: 239)
Name: NF19773_low_82
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29581079 - 29581302
Alignment:
| Q |
1 |
tcgcgtgctagatctctatgtatctgtcaaaacaatttgttagaacacaagtgttgcaattgaaagttggaagactaaacaccaagtcccacatattgga |
100 |
Q |
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| T |
29581079 |
tcgcgtgctagatctctatgtatctgtcaaaacaaattgttagaacacaagtgttgcaattgaaagttggaagactaaacaccaagtcccacatattgga |
29581178 |
T |
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| Q |
101 |
tagaagcataactagtgttagtgttgtgtgcccat--nnnnnnnngtgtttgtgttgtgtgaattgtaaaaataccccacatgggatagatcacatacat |
198 |
Q |
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| T |
29581179 |
tagaagcataactagtgttagtgttgtgtgcccataaaaaaaaaattgtttgtgttgtgtgaattgtaaaaataccccacatgggatagatcacatacat |
29581278 |
T |
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| Q |
199 |
tgatagtgtttatatagaaggagt |
222 |
Q |
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|||||||||||||||||||||||| |
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| T |
29581279 |
tgatagtgtttatatagaaggagt |
29581302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 29612894 - 29612790
Alignment:
| Q |
1 |
tcgcgtgctagatctctatgtatctgtcaaaacaatttgttagaacacaagtgttgcaattgaaagttggaagactaaacaccaagtcccacatattgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
29612894 |
tcgcgtgctagatctctatgtatctgtcaaaacaatttgttagaacacaagtgtggcaattgaaagttggaaaacaaaacaccaagtcccacatattgga |
29612795 |
T |
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| Q |
101 |
tagaa |
105 |
Q |
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||||| |
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| T |
29612794 |
tagaa |
29612790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 29612786 - 29612712
Alignment:
| Q |
144 |
gtgtttgtgttgtgtgaattgtaaaaataccccacatgggatagatcacatacattgatagtgtttatatagaaggag |
221 |
Q |
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||||| |||| |||||||||||||||||||||||||| |||| | || | |||||||||||||||||||||||||| |
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| T |
29612786 |
gtgttagtgtcgtgtgaattgtaaaaataccccacattggat---ttacttgcattgatagtgtttatatagaaggag |
29612712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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