View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_low_83 (Length: 238)

Name: NF19773_low_83
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_low_83
NF19773_low_83
[»] chr3 (18 HSPs)
chr3 (15-222)||(22457986-22458193)
chr3 (15-222)||(22480967-22481174)
chr3 (15-222)||(22436128-22436335)
chr3 (15-222)||(22635003-22635210)
chr3 (15-222)||(22467448-22467655)
chr3 (15-222)||(22357499-22357706)
chr3 (15-222)||(22620381-22620588)
chr3 (15-222)||(22629940-22630145)
chr3 (15-222)||(22430667-22430874)
chr3 (15-177)||(22442239-22442401)
chr3 (15-125)||(37930357-37930467)
chr3 (15-218)||(22367421-22367624)
chr3 (19-121)||(22353313-22353415)
chr3 (15-175)||(22656551-22656711)
chr3 (15-177)||(30988790-30988952)
chr3 (15-122)||(22647669-22647776)
chr3 (15-175)||(21946445-21946605)
chr3 (91-177)||(22628096-22628182)
[»] chr1 (4 HSPs)
chr1 (15-175)||(2304971-2305131)
chr1 (15-167)||(34990046-34990198)
chr1 (15-122)||(34976245-34976352)
chr1 (15-122)||(34983356-34983463)
[»] chr5 (1 HSPs)
chr5 (19-164)||(40580766-40580911)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22457986 - 22458193
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22457986 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 22458085  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22458086 tcttccaatgtttttaccatatcatctttcacaaatccttcagccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatc 22458185  T
Q  215 caaaatac 222  Q
    ||||||||    
T  22458186 caaaatac 22458193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22480967 - 22481174
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22480967 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 22481066  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22481067 tcttccaatgtttttaccatatcatctttcacaaatccttcagccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatc 22481166  T
Q  215 caaaatac 222  Q
    ||||||||    
T  22481167 caaaatac 22481174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22436128 - 22436335
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||||||||| |||||||||| |||| ||| ||| ||| |||||||||| | ||||| |    
T  22436128 atcatgaacacgacaactttttactcttccatcaatacttattgaaactacatgcaccaaacttctattgaccaactctattaaatatccttttgcaata 22436227  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||||||  || | || || ||||||||||| |||||||| |||||||| ||| ||||| | |||| | |||||||| |  |||||||||||||||    
T  22436228 tcttccaatgtccttcccctctcttctttcacgaacccttcagcaatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatc 22436327  T
Q  215 caaaatac 222  Q
    ||||||||    
T  22436328 caaaatac 22436335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22635003 - 22635210
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||| |  ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||  |||||| |||  ||||||||| ||||||||     
T  22635003 atcatgaacgcggcaactttttactcttccatcaatactagttgaaactacttgcaccaaacttctatggatcaactctactaaatatccttctgcaacc 22635102  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    ||||| |||||  || | || || ||||||||||| |||||||| |||||||| ||| ||||| | |||| | |||||||| |  |||||||||||||||    
T  22635103 tcttcaaatgtccttcccctgtcttctttcacgaacccttcagcaatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatc 22635202  T
Q  215 caaaatac 222  Q
    ||||||||    
T  22635203 caaaatac 22635210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22467448 - 22467655
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||  |||||| ||| |||||||||| || |||||     
T  22467448 atcatgaacacgacaactttttactcttccatcaatacttattgaaactacttgcaccaaacttctatggatcaactctattaaatatccttcagcaacc 22467547  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||||||  |  | || || || ||||| || |||||||| |||||||| ||| ||||  | |||| | |||||||| |  |||||||||||||||    
T  22467548 tcttccaatgtcctccccctgtcttccttcacaaacccttcagcaatccattggcgagtcaacgtctttgaatgaactatatagtcttcaggatataatc 22467647  T
Q  215 caaaatac 222  Q
    ||||||||    
T  22467648 caaaatac 22467655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22357499 - 22357706
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| ||||| |||| |||||||||||||||| |||||| ||||||||||||||| ||||   || || ||| |||||||||| ||||||||     
T  22357499 atcatgaacacgacaacgttttactcttccatcaatactgattgaatctacttgcaccaaacttctatgtattaactcttttaaatatccttctgcaacc 22357598  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||  ||| || | | ||  | |||||| || |||||||| |||||||| ||| ||||| | |||| | ||||| || |  |||||||||||||||    
T  22357599 tcttccatcgttctttccccatattgtttcacaaacccttcagcaatccattgtcgagtcaatgtctttgaatgaactttatagtcttcaggatataatc 22357698  T
Q  215 caaaatac 222  Q
    ||||||||    
T  22357699 caaaatac 22357706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22620381 - 22620588
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||| ||||||||||||| | ||||||| || || | ||||  |||||||||||||| ||||  |||||| |||||||| ||||| ||||||||     
T  22620381 atcatgaacgcaacaactttttgtttttccatcgattcttagtgaagatacttgcaccaaacttctatggatcaactctgttaagtatccttctgcaact 22620480  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||| || ||  | || || ||||| || || |||||||| |||||||||||||||||| | |||| |  |||| || || |||| ||||||||||    
T  22620481 tcttccaaagtattccccctttcttcttttacaaacccttcagctatccattgccgaatcaatctctttgaatcaactttataatcttctggatataatc 22620580  T
Q  215 caaaatac 222  Q
    ||||||||    
T  22620581 caaaatac 22620588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22629940 - 22630145
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    |||||| |||| |||||||||| |||||||||  |||||  ||||||||||||||||||||| ||||| || ||| ||| |||||||||| ||| ||||     
T  22629940 atcatgtacacgacaactttttactcttccat--atacttgttgaaactacttgcaccaaacttctacggaccaactctattaaatatccttctccaacc 22630037  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||||||| || |  |  | |||||||| || |||||||| |||||||| ||| |||| |  |||| | |||||||| |  |||||||||| ||||    
T  22630038 tcttccaatgttcttcccttgacttctttcacaaacccttcagcgatccattggcgagtcaacacctttgaacgaactatatagtcttcaggatagaatc 22630137  T
Q  215 caaaatac 222  Q
    ||||||||    
T  22630138 caaaatac 22630145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22430667 - 22430874
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| ||||||| || |||||||||||||||| |||||| ||||||||||||||| ||||  |||||| ||| |||||||||| ||||||||     
T  22430667 atcatgaacacgacaacttcttactcttccatcaatacttattgaatctacttgcaccaaacttctatggatcaactctattaaatatccttctgcaacc 22430766  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||| ||||||  || |  | |  |||||||| || |||||||| |||||||| | | | ||| | |||| |  ||||||| |  ||| |||||||||||    
T  22430767 tctttcaatgtccttcccgttttttctttcacaaacccttcagcaatccattgacaagttaatgtctttgaataaactatatagtctttaggatataatc 22430866  T
Q  215 caaaatac 222  Q
    ||||||||    
T  22430867 caaaatac 22430874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 22442239 - 22442401
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    |||||||||||  ||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||| ||| ||  || |||||||||| ||||||||     
T  22442239 atcatgaacacggcaactttttactcttccatcaatactggttgaaactacttgcaccaaacttctacagattaacacttttaaatatccttctgcaacc 22442338  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaat 177  Q
    | |||||||||  || | | ||  |||||||| || |||||||| |||||||| ||| |||||    
T  22442339 ttttccaatgtcctttccccatattctttcacaaacccttcagctatccattgacgagtcaat 22442401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 37930357 - 37930467
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| |||||||||| |||||||||||||||   ||||||||||||||||||||| ||||| ||| || ||| |||||||||| || |||||     
T  37930357 atcatgaacacgacaactttttactcttccatcaataccggttgaaactacttgcaccaaacttctacagattaactcttttaaatatccttccgcaacc 37930456  T
Q  115 tcttccaatgt 125  Q
    | |||||||||    
T  37930457 ttttccaatgt 37930467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 22367421 - 22367624
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    |||||||||||  ||||| | | |||||||||||||| | ||   | ||||| ||||||||| ||||| |||||| ||| |||||| ||| ||||||||     
T  22367421 atcatgaacacggcaactgtctactcttccatcaatagtgatcccatctactcgcaccaaacttctacggatcaactctattaaatgtccttctgcaacc 22367520  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||||||  || | || || |||||||| || |||||||| |||||||| ||| |||||||||||| | ||||  |  |  |||||||||||||||    
T  22367521 tcttccaatgtcattcccctttcttctttcacaaacccttcagcaatccattgacgagtcaatatatttgaacgaacatttgagtcttcaggatataatc 22367620  T
Q  215 caaa 218  Q
    ||||    
T  22367621 caaa 22367624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 22353313 - 22353415
Alignment:
Q  19 tgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatctt 118  Q
    ||||||| |||||||||| |||||||||||||||| | |||| ||||||||||||||| ||||  ||| || ||| |||||||||| |||||||| ||||    
T  22353313 tgaacacgacaactttttactcttccatcaatactgactgaatctacttgcaccaaacttctatggattaactcttttaaatatccttctgcaacctctt 22353412  T
Q  119 cca 121  Q
    |||    
T  22353413 cca 22353415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 22656551 - 22656711
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    |||||| |||||||||||||| | | |||| ||||| |||| |||   |||||| ||||||| ||  |  ||||| |||||||||||||| ||||||||     
T  22656551 atcatggacacaacaacttttagtttttccgtcaattctaactgaggatacttgtaccaaacatcggcgaatcaactctgttaaatatccttctgcaact 22656650  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 175  Q
    |||||||| |||||  | || || |||||||| || |||||||| ||||||||||| ||||    
T  22656651 tcttccaaagttttccccctttcttctttcacaaaaccttcagctatccattgccgtatca 22656711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 30988790 - 30988952
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| ||||| ||| ||| | |||||||  ||||  |||  |||||||||||| | ||||  |||||| |||||||||||||| ||||||||     
T  30988790 atcatgaacacgacaacctttagctttaccatcaactctaaccgaagatacttgcaccaagcttctatggatcaactctgttaaatatccttctgcaacg 30988889  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaat 177  Q
    |||||||| || ||  | || || || |||||||| |||||||| | |||||| |||||||||    
T  30988890 tcttccaaagtcttccctctttcctccttcacgaacccttcagctacccattgtcgaatcaat 30988952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 22647669 - 22647776
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    |||||||||||| |||||||| | | |||||||||| |||| ||||  |||||| ||||||| ||||  |||||| || ||||||||||  ||||||||     
T  22647669 atcatgaacacagcaacttttagtttttccatcaattctaactgaagatacttgaaccaaacttctatggatcaactcagttaaatatcgttctgcaact 22647768  T
Q  115 tcttccaa 122  Q
    ||||||||    
T  22647769 tcttccaa 22647776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 21946605 - 21946445
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| ||||| ||| ||| | |||||||| |||| ||||  |||||| ||||  | ||||  |||||| |||||||||||||| ||||| ||     
T  21946605 atcatgaacacgacaacctttagctttaccatcaattctaagtgaagatacttgaaccaggcttctatggatcaactctgttaaatatccttctgccact 21946506  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 175  Q
    |||||||| || ||  | || || || ||||| || |||||||| |||||||| |||||||    
T  21946505 tcttccaaagtcttccctctttcctccttcacaaacccttcagctatccattgtcgaatca 21946445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 22628096 - 22628182
Alignment:
Q  91 tctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaat 177  Q
    |||||||||||||| ||||  || ||||| || |||||| | || || |||||||| ||||||||||| ||| |||| |||||||||    
T  22628096 tctgttaaatatccttctgtgacttcttcgaaagtttttcccctttcttctttcacaaatccttcagctatcaattgtcgaatcaat 22628182  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 2304971 - 2305131
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||||||||||||| | | |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||| ||||||||| ||||||||     
T  2304971 atcatgaacacaacaacttttagattttccatcaatgctaactgaggatacttgcaccaaacttcgacgaatcaactctgataaatatccttctgcaact 2305070  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 175  Q
    |||||||| || ||  | || || || ||||| || |||||||| ||||| || |||||||    
T  2305071 tcttccaaagtcttcccactttcctccttcacaaacccttcagctatccactgtcgaatca 2305131  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 34990198 - 34990046
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||||||||||| | | | |||||||||| |||| |||   |||||||||||||| |||||  ||||| |||||||||||||  ||| ||||     
T  34990198 atcatgaacacaacaacttctagtttttccatcaatgctaactgaggatacttgcaccaaacttctacgaatcaactctgttaaatatctttcttcaact 34990099  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattg 167  Q
    |||||||| || ||  | || || |||||||| || |||||||| ||||||||    
T  34990098 tcttccaaagtcttcccactttcctctttcacaaacccttcagctatccattg 34990046  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 34976352 - 34976245
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||||||||||||| |   |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||||||||||||| | ||||||     
T  34976352 atcatgaacacaacaacttttaggctttccatcaattctaactgaggatacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaact 34976253  T
Q  115 tcttccaa 122  Q
    ||||||||    
T  34976252 tcttccaa 34976245  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 34983463 - 34983356
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||||||||||||| |   |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||||||||||||| | ||||||     
T  34983463 atcatgaacacaacaacttttaggctttccatcaattctaactgaggatacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaact 34983364  T
Q  115 tcttccaa 122  Q
    ||||||||    
T  34983363 tcttccaa 34983356  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 40580911 - 40580766
Alignment:
Q  19 tgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatctt 118  Q
    |||||| |||||||||| | | |||||||||| ||||||||   ||||||||||||||  | ||  ||||| || ||||||||| | || ||||| ||||    
T  40580911 tgaacaaaacaacttttagtttttccatcaattctaattgaggatacttgcaccaaactacgacgaatcaactcagttaaatatacttcagcaacttctt 40580812  T
Q  119 ccaatgtttttacgctatcatctttcacgaatccttcagccatcca 164  Q
    |||| || ||| | || || || ||||| || |||||||| |||||    
T  40580811 ccaaagtctttccactttcctccttcacaaacccttcagctatcca 40580766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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