View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_84 (Length: 238)
Name: NF19773_low_84
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 10654549 - 10654758
Alignment:
| Q |
1 |
ttccaagaggccaagattccatatgggtcattagaaattgattctttgaatttgagtaatgccaggtaatctgtctcatttcctaaggtagaattaaatg |
100 |
Q |
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| T |
10654549 |
ttccaagaggccaagattccatatgggtcattagaaattgattctttgaatttgagtaacgctaagtaatctgtcttgtttcctaaggtagaggtaattg |
10654648 |
T |
|
| Q |
101 |
tgttttggacagagttgagagtaaagagaagagataaccaaaatgaaaatgttggaaacatgattggaaaaggttttgaggaacaagggattatttcgga |
200 |
Q |
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| T |
10654649 |
tgttttggacaaagttgagagtaaagagaagagataaccaaaatgaaaatgttggaaacatgattggaaaaggttttgaggaacaagggaatattttgga |
10654748 |
T |
|
| Q |
201 |
ctgtgtaatt |
210 |
Q |
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||||||||| |
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| T |
10654749 |
ttgtgtaatt |
10654758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 10662432 - 10662627
Alignment:
| Q |
1 |
ttccaagaggccaagattccatatgggtcattagaaattgattctttgaatttgagtaatgccaggtaatctgtctcatttcctaaggtagaattaaatg |
100 |
Q |
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| T |
10662432 |
ttccaagagctcaagatctcatacgggtcattagatattgattctttgaatttgagcaacgctaagtaatccgtctcgtttcttaaggtagaggtaattg |
10662531 |
T |
|
| Q |
101 |
tgttttggacagagttgagagtaaagagaagagataaccaaaatgaaaatgttggaaacatgattggaaaaggttttgaggaacaagggattattt |
196 |
Q |
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| T |
10662532 |
tgttttggacaaagttgagagcaaagagaagatataaccaaaatgaaaatgttggaaacatgacaaacaaaggttttgaggaacaagggactattt |
10662627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 7190864 - 7190685
Alignment:
| Q |
1 |
ttccaagaggccaagattccatatgggtcattagaaattgattctttgaatttgagtaatgccaggtaatctgtctcatttcctaaggtagaattaaatg |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| || |||| || ||| |||||| ||||||| |||||| |||||| |
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| T |
7190864 |
ttccaagaggccaagattccatatggatcattagatattgattctttgaacttgagcaacgccaagttatcggtctcagttcctaatgtagaagtaaatg |
7190765 |
T |
|
| Q |
101 |
tgttttggacagagttgagagtaaagagaagagataaccaaaatgaaaatgttggaaacatgattggaaaaggttttgag |
180 |
Q |
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| T |
7190764 |
tgttttggaagaagttgaaagcaatgagaaaagataaccaaagtgaaaatgttggaaacatgacatgaaaaggctttgag |
7190685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 12955641 - 12955599
Alignment:
| Q |
22 |
tatgggtcattagaaattgattctttgaatttgagtaatgcca |
64 |
Q |
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| T |
12955641 |
tatgggtcactagaaattgattctttgaatttgagcaatgcca |
12955599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 12897406 - 12897364
Alignment:
| Q |
22 |
tatgggtcattagaaattgattctttgaatttgagtaatgcca |
64 |
Q |
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||||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
12897406 |
tatgggtcactggaaattgattctttgaatttgagcaatgcca |
12897364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 12946482 - 12946440
Alignment:
| Q |
22 |
tatgggtcattagaaattgattctttgaatttgagtaatgcca |
64 |
Q |
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||||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
12946482 |
tatgggtcactggaaattgattctttgaatttgagcaatgcca |
12946440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 12955919 - 12955877
Alignment:
| Q |
22 |
tatgggtcattagaaattgattctttgaatttgagtaatgcca |
64 |
Q |
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||||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
12955919 |
tatgggtcacttgaaattgattctttgaatttgagcaatgcca |
12955877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 17925774 - 17925816
Alignment:
| Q |
22 |
tatgggtcattagaaattgattctttgaatttgagtaatgcca |
64 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
17925774 |
tatgggtcactagaaattgattctttgaatttgagcaatgcca |
17925816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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