View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_85 (Length: 238)
Name: NF19773_low_85
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_85 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 35628978 - 35629198
Alignment:
| Q |
18 |
aagtctccctctaatgatttcacaagataatctttaaacctttcatgaaaagctatgtcctgaattggatttggagttatcctcttatcaccaagattaa |
117 |
Q |
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| T |
35628978 |
aagtctccctctaatgatttcacaagataacctttaaaccttccatgaaaagctatgtcctgaattggatttggagttatccttttatgaccaagattaa |
35629077 |
T |
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| Q |
118 |
aagacattataccgtgatatttactcgcaacataaactaaacctccatagaacataatatcctgaaaggaatgacgccagctcgagctatatacataagt |
217 |
Q |
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|||| | |||||| |||||||||||| |||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||| |||||||||| |
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| T |
35629078 |
aagatactataccctgatatttactcccaacataaactaaacctctatagaacataacatccataaaggaatgaagccagctcgagctacatacataagt |
35629177 |
T |
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| Q |
218 |
ccagcatggttcacccgcttt |
238 |
Q |
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| T |
35629178 |
ccagcatggttcacccgcttt |
35629198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 35625269 - 35625319
Alignment:
| Q |
18 |
aagtctccctctaatgatttcacaagataatctttaaacctttcatgaaaa |
68 |
Q |
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||||||||||||||||| |||||||||||| ||||||| || |||||||| |
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| T |
35625269 |
aagtctccctctaatgacttcacaagataacctttaaaggttccatgaaaa |
35625319 |
T |
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