View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_88 (Length: 237)
Name: NF19773_low_88
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 32821821 - 32821617
Alignment:
| Q |
20 |
gagtgatcggtattctacattttttcaaaaattttaagttgcctagcgtttaaaaggcagacattagattcgtaggtttgagtcccactaaatctctaca |
119 |
Q |
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| T |
32821821 |
gagtgatcggtattctacattttttcaaaaattctaagttgcctagcgtttaaaaggcagacattagattcgtaggtttgagtcccactaaatctctaca |
32821722 |
T |
|
| Q |
120 |
ttgtggagagaaaaaattggatacttggttgaaatgatggttacaa-annnnnnnnctttccatttaatgttaggtaatattttcatattaatcttattt |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32821721 |
ttgtggagagaaaaaattggatacttagttgaaatgatggttacaattttttttttctttccatttaatgttaggtaatattttcatattaatcttattt |
32821622 |
T |
|
| Q |
219 |
aaaat |
223 |
Q |
| |
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||||| |
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| T |
32821621 |
aaaat |
32821617 |
T |
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