View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_9 (Length: 571)
Name: NF19773_low_9
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 205 - 544
Target Start/End: Original strand, 18237770 - 18238109
Alignment:
| Q |
205 |
ctttcatcaaatcaaacatatgcatgtatgtccttaagtatgtccaaaatataatcaccttcgattctgaggagaaaggaaataaattccaatgctgaag |
304 |
Q |
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| T |
18237770 |
ctttcatcaaatcaaacatatgcatgtatatccttaagtatgtccaaaatataatcaccttggattatgaggagaaaggaaataaattccaatgctgaag |
18237869 |
T |
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| Q |
305 |
ttattcgtaccagaattcttgaaactttcaggccacacagttgatttttgatggaagtttgcagaaatcatattagggagatatctagcctcttcatgaa |
404 |
Q |
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| T |
18237870 |
ttattcgtaccagaattcttgaaactttcaggccacacggttgatttttgaaggaagtttgcagaaatcatattagggagatatctagcctcttcatgaa |
18237969 |
T |
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| Q |
405 |
ctttagggcatgctaaaatagacaaatgtcccattagttcaatgacttttccaatatttgaaaccttcaaacatcccctattgtccaagaaaattaaact |
504 |
Q |
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| T |
18237970 |
ctttagggcatgctaaagtagacaaatgtcccattagttcaatgacttttccaatgtttgaaaccttcaaacatcccctattatccaagaaaattaaact |
18238069 |
T |
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| Q |
505 |
ttagacatattctatcattaattccaaaacagccataggt |
544 |
Q |
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| T |
18238070 |
tcagacatattctatcattaattccaaaacagccataggt |
18238109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 18237584 - 18237696
Alignment:
| Q |
19 |
aaagttgattgatgtgacaaaatagtgaaattttattagacgtcgtctcaaatccactttacaccgacgatagatatcctttaaatcgaaaaaacatatc |
118 |
Q |
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| T |
18237584 |
aaagtggattgatgtgacaaaatagtgaaattttattagacgtcgtctcaaatccactttacaccgatgatagatatcctttatatcgaaaaaaaacatc |
18237683 |
T |
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| Q |
119 |
atattttatgtct |
131 |
Q |
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| T |
18237684 |
attttttatgtct |
18237696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 442
Target Start/End: Original strand, 11788386 - 11788449
Alignment:
| Q |
379 |
agggagatatctagcctcttcatgaactttagggcatgctaaaatagacaaatgtcccattagt |
442 |
Q |
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| T |
11788386 |
agggatatgtcttgcctcttcaagtactttagggcatgctaatgtggacaaatgtcccattagt |
11788449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 501468 - 501512
Alignment:
| Q |
398 |
tcatgaactttagggcatgctaaaatagacaaatgtcccattagt |
442 |
Q |
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| T |
501468 |
tcatgaactttagggcatgctaaattggacaaatggccaattagt |
501512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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