View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19773_low_98 (Length: 219)
Name: NF19773_low_98
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_98 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 132620 - 132811
Alignment:
| Q |
16 |
acagaattgtagttccaaacagcgacattgatctcacgaaggccttcaatgagggaaaacacaaacttctcttgaaaaacagggttttttccaccatctg |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
132620 |
acagtattgtagttccaaacagcgacattgatctcacgaaggccttcaatgagggaaaacacaaacttctcttgaaaaacagggttttttccaccatctg |
132719 |
T |
|
| Q |
116 |
aaatcaaaattgaaggagtaaacaaaaagtcaagataagggtcaaactaatta----acctacctacctacctacgtacctgtgcatgtttt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
132720 |
aaatcaaaattgaaggagtaaacaaaaagtcaagataagggtcaaactaattaacctacctacctacctacctacgtacctgtgcatgtttt |
132811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 160836 - 160756
Alignment:
| Q |
27 |
gttccaaacagcgacattgatctcacgaaggccttcaatgagggaaaacacaaacttctcttgaaaaacagggttttttcc |
107 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||| |||| || | |||||||||||||| |||||||||||||| |
|
|
| T |
160836 |
gttccaaacgacaacattgatctcacgaaggccttcaattaggggaagtatgaacttctcttgaaatacagggttttttcc |
160756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University