View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_low_99 (Length: 213)
Name: NF19773_low_99
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_low_99 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 36444902 - 36445002
Alignment:
| Q |
25 |
ccagatgtgtatattggttatagaatataatgttaacaattcatataattgttgtgtctgcaaatttgaatttgttttattgtcgattcaaaaagaattg |
124 |
Q |
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| T |
36444902 |
ccagatgtgtatattggttatagaatataatgttaacaattcatataattgttgtgtctgcaaatttgaatttgttttactgtcgattcaaaaagaattg |
36445001 |
T |
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| Q |
125 |
t |
125 |
Q |
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| T |
36445002 |
t |
36445002 |
T |
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Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 36467357 - 36467453
Alignment:
| Q |
25 |
ccagatgtgtatattggttatagaatataatgttaacaattcatataattgttgtgtctgcaaatttgaatttgttttattgtcgattcaaaaagaa |
121 |
Q |
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| T |
36467357 |
ccagatgtgtatattggttatagaatataatgttaacaattcatataattgttgtgtctgcaaatttgaatttgttttattgttgattcaaaaagaa |
36467453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 8329217 - 8329268
Alignment:
| Q |
29 |
atgtgtatattggttatagaatataatgttaacaattcatataattgttgtgtc |
82 |
Q |
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| T |
8329217 |
atgtgtatattgcttatagaata--atattaactattcatataattgttgtgtc |
8329268 |
T |
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